List of works - Andrew Allan

A MYB transcription factor regulates anthocyanin biosynthesis in mangosteen (Garcinia mangostana L.) fruit during ripening

scientific article published on 22 March 2009

A dramatic decline in fruit citrate induced by mutagenesis of a <scp>NAC</scp> transcription factor, <i>AcNAC1</i>

scientific article published in 2023

A gene expression atlas for kiwifruit (Actinidia chinensis) and network analysis of transcription factors

scientific article

A genome-wide expression profile of salt-responsive genes in the apple rootstock Malus zumi

scientific article

A kiwifruit (Actinidia deliciosa) R2R3-MYB transcription factor modulates chlorophyll and carotenoid accumulation.

scientific article published in August 2018

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

scientific article published on 16 April 2018

A metabolic perspective of selection for fruit quality related to apple domestication and improvement

scientific article published in 2023

AcFT promotes kiwifruit in vitro flowering when overexpressed and Arabidopsis flowering when expressed in the vasculature under its own promoter

scientific article published on 10 July 2018

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae

scientific article

An R2R3 MYB transcription factor determines red petal colour in an Actinidia (kiwifruit) hybrid population

scientific article

An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes.

scientific article published on 24 October 2012

An early tobacco mosaic virus-induced oxidative burst in tobacco indicates extracellular perception of the virus coat protein

scientific article published in May 2001

An improved method for transformation of Actinidia arguta utilized to demonstrate a central role for MYB110 in regulating anthocyanin accumulation in kiwiberry

scientific article published in 2020

Analyses of expressed sequence tags from apple.

scientific article

Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening.

scientific article

Analysis of genetically modified red-fleshed apples reveals effects on growth and consumer attributes.

scientific article published on 6 November 2012

Apple B-box factors regulate light-responsive anthocyanin biosynthesis genes

scientific article published on 28 November 2019

Apple Functional Genomics

scholarly article published 2009

Apple skin patterning is associated with differential expression of MYB10.

scientific article

Carbon starvation reduces carbohydrate and anthocyanin accumulation in red-fleshed fruit via trehalose 6-phosphate and MYB27

scientific article published on 30 December 2019

Carotenoid accumulation in durian (Durio zibethinus) fruit is affected by ethylene via modulation of carotenoid pathway gene expression

scientific article published on 31 March 2017

Characterisation of the DELLA subfamily in apple (Malus x domestica Borkh.)

scientific article published on 17 November 2006

Characterization and differential expression of ethylene receptor genes during fruit development and dehiscence of durian (Durio zibethinus)

scholarly article published in October 2018

Chloroplastic biosynthesis of melatonin and its involvement in protection of plants from salt stress

scientific article published on February 2017

Comparative Transcriptome Analysis of White and Purple Potato to Identify Genes Involved in Anthocyanin Biosynthesis

scientific article published on 8 June 2015

Coordinated regulation of anthocyanin biosynthesis in Chinese bayberry (Myrica rubra) fruit by a R2R3 MYB transcription factor

scientific article published in March 2010

DNA demethylation is involved in the regulation of temperature-dependent anthocyanin accumulation in peach

scientific article published on 10 January 2020

DNA methylation controlling abscisic acid catabolism responds to light to mediate strawberry fruit ripening

De Novo Assembly and Characterization of the Transcriptome of the Chinese Medicinal Herb, Gentiana rigescens

scientific article published on 20 May 2015

Dietary flavonoids from modified apple reduce inflammation markers and modulate gut microbiota in mice.

scientific article

Differential Sensitivity of Fruit Pigmentation to Ultraviolet Light between Two Peach Cultivars

scientific article published on 8 September 2017

Differential expression within the LOX gene family in ripening kiwifruit.

scientific article

Differential regulation of the anthocyanin profile in purple kiwifruit ( species)

scientific article published on 01 January 2019

Domestication: Colour and Flavour Joined by a Shared Transcription Factor

scientific article published on 01 January 2019

Ectopic Overexpression of a Novel R2R3-MYB, NtMYB2 from Chinese Narcissus Represses Anthocyanin Biosynthesis in Tobacco.

scientific article published on 28 March 2018

Effects of mechanical signaling on plant cell cytosolic calcium

scientific article

Effects of red-leaved transgenic tobacco expressing a MYB transcription factor on two herbivorous insects,Spodoptera lituraandHelicoverpa armigera

Efficient transient transformation of suspension culture-derived apple protoplasts

article published in 2002

Endogenous cytokinin in developing kiwifruit is implicated in maintaining fruit flesh chlorophyll levels

scientific article published on 3 May 2013

Engineering the anthocyanin regulatory complex of strawberry (Fragaria vesca).

scientific article

Enhancing ascorbate in fruits and tubers through over-expression of the L-galactose pathway gene GDP-L-galactose phosphorylase.

scientific article published in December 2011

Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis thaliana

scientific article published on 12 January 2009

Ethylene-induced modulation of genes associated with the ethylene signalling pathway in ripening kiwifruit

scientific article published on January 2008

Flow cytometric analysis of tracheary element differentiation in Zinnia elegans cells

scientific article published on 01 December 2005

Functional diversification of the potato R2R3 MYB anthocyanin activators AN1, MYBA1, and MYB113 and their interaction with basic helix-loop-helix cofactors

scientific article published on 16 February 2016

Genome-wide analysis and expression profiles of the StR2R3-MYB transcription factor superfamily in potato (Solanum tuberosum L.).

scientific article published on 18 January 2020

Genome-wide analysis of coding and non-coding RNA reveals a conserved miR164-NAC regulatory pathway for fruit ripening

scientific article published on 11 November 2019

Genomic survey and gene expression analysis of the MYB-related transcription factor superfamily in potato (Solanum tuberosum L.).

scientific article published on 11 August 2020

Heat-induced oxidative activity protects suspension-cultured plant cells from low temperature damage

article

High temperature reduces apple fruit colour via modulation of the anthocyanin regulatory complex

scientific article published on 21 April 2011

Histone modification and activation by SOC1-like and drought stress-related transcription factors may regulate AcSVP2 expression during kiwifruit winter dormancy

scientific article published on 05 December 2018

Identification and characterisation of F3GT1 and F3GGT1, two glycosyltransferases responsible for anthocyanin biosynthesis in red-fleshed kiwifruit (Actinidia chinensis).

scientific article published on 29 November 2010

Identification of Genes Involved in Flavonoid Biosynthesis of Chinese Narcissus (Narcissus tazetta L. var. chinensis)

scholarly article

Identification of Mendel's white flower character

scientific article

Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes

scientific article published on 7 July 2008

Identification of regulatory genes implicated in continuous flowering of longan (Dimocarpus longan L.).

scientific article

In the Solanaceae, a hierarchy of bHLHs confer distinct target specificity to the anthocyanin regulatory complex

scientific article

Indigenous Perspectives and Gene Editing in Aotearoa New Zealand

article

Isolation of a novel peroxisomal catalase gene from sugarcane, which is responsive to biotic and abiotic stresses

scientific article

Kiwifruit EIL and ERF genes involved in regulating fruit ripening.

scientific article published on 10 May 2010

Kiwifruit SVP2 controls developmental and drought-stress pathways

scientific article

Kiwifruit SVP2 gene prevents premature budbreak during dormancy

scientific article published on 3 February 2017

MYB transcription factors that colour our fruit

scientific article published on 14 February 2008

MYBA From Blueberry ( Section ) Is a Subgroup 6 Type R2R3MYB Transcription Factor That Activates Anthocyanin Production

scientific article published in 2018

MYBs Drive Novel Consumer Traits in Fruits and Vegetables

scientific article published on 01 August 2018

Map-based cloning of the pear gene MYB114 identifies an interaction with other transcription factors to coordinately regulate fruit anthocyanin biosynthesis.

scientific article

Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple

scientific article

Metabolic and gene expression analysis of apple (Malus x domestica) carotenogenesis.

scientific article published on 19 June 2012

Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae).

scientific article published on 2 February 2016

Molecular architectures of benzoic acid-specific type III polyketide synthases

scientific article published on 30 November 2017

Molecular genetics of blood-fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors.

scientific article published on 4 March 2015

Multiple Copies of a Simple MYB-Binding Site Confers Trans-regulation by Specific Flavonoid-Related R2R3 MYBs in Diverse Species

scientific article published on 31 October 2017

Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples.

scientific article

Mutagenesis of kiwifruit CENTRORADIALIS-like genes transforms a climbing woody perennial with long juvenility and axillary flowering into a compact plant with rapid terminal flowering

scientific article published on 25 October 2018

Natural variation in monoterpene synthesis in kiwifruit: transcriptional regulation of terpene synthases by NAC and ETHYLENE-INSENSITIVE3-like transcription factors

scientific article

NtMYB3, an R2R3-MYB from Narcissus, Regulates Flavonoid Biosynthesis ⬇️

scientific article published on 01 November 2019

Orange is not just a colour

scientific article published on 01 November 2018

Overexpression of the kiwifruit SVP3 gene affects reproductive development and suppresses anthocyanin biosynthesis in petals, but has no effect on vegetative growth, dormancy, or flowering time.

scientific article published on 19 June 2014

PbrMYB169 positively regulates lignification of stone cells in pear fruit

scientific article published on 01 March 2019

PbrmiR397a regulates lignification during stone cell development in pear fruit

scientific article published on 21 June 2018

Peach MYB7 activates transcription of the proanthocyanidin pathway gene encoding leucoanthocyanidin reductase, but not anthocyanidin reductase

scientific article

Phytohormone and Transcriptomic Analysis Reveals Endogenous Cytokinins Affect Kiwifruit Growth under Restricted Carbon Supply

scientific article published on 04 January 2020

Postharvest temperature influences volatile lactone production via regulation of acyl-CoA oxidases in peach fruit

scientific article published on 24 October 2011

PpGST1, an anthocyanin-related glutathione S-transferase gene, is essential for fruit coloration in peach

scientific article published on 19 November 2019

QTL analysis and candidate gene mapping for skin and flesh color in sweet cherry fruit (Prunus avium L.)

article

QTL and candidate gene mapping for polyphenolic composition in apple fruit

scientific article

QTL involved in the modification of cyanidin compounds in black and red raspberry fruit

scientific article published on 9 December 2012

Re-programming of Pseudomonas syringae pv. actinidiae gene expression during early stages of infection of kiwifruit

article

Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10.

scientific article published on 20 December 2006

Red to Brown: An Elevated Anthocyanic Response in Apple Drives Ethylene to Advance Maturity and Fruit Flesh Browning

scientific article published on 09 October 2019

Red-foliaged apples affect the establishment, growth, and development of the light brown apple moth,Epiphyas postvittana

article

SVP-like MADS Box Genes Control Dormancy and Budbreak in Apple

scientific article

Solar UV light regulates flavonoid metabolism in apple (Malus x domestica).

scientific article

StMYB44 negatively regulates anthocyanin biosynthesis at high temperatures in tuber flesh of potato

scientific article published on 01 August 2019

The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.

scientific article published on 3 February 2016

The Coordinated Action of MYB Activators and Repressors Controls Proanthocyanidin and Anthocyanin Biosynthesis in Vaccinium

scientific article published in 2022

The Photomorphogenic Transcription Factor PpHY5 Regulates Anthocyanin Accumulation in Response to UVA and UVB Irradiation

scientific article published in 2021

The Phytoene synthase gene family of apple (Malus x domestica) and its role in controlling fruit carotenoid content

scientific article published on 28 July 2015

The characterization of differential calcium signalling in tobacco guard cells

scientific article published on 01 November 2000

The control of chlorophyll levels in maturing kiwifruit.

scientific article published on 29 July 2012

The draft genome sequence of European pear (Pyrus communis L. 'Bartlett')

scientific article

The effect of 1-methylcyclopropene (1-MCP) on expression of ethylene receptor genes in durian pulp during ripening

scientific article published on 10 February 2018

The effects of calcium deficiency on Cucurbita pepo L. hypocotyl cells: A (31)P nuclear-magnetic-resonance study

scientific article

The genome of the domesticated apple (Malus × domestica Borkh.)

scientific article

The genome of woodland strawberry (Fragaria vesca)

scientific article

The involvement of PybZIPa in light-induced anthocyanin accumulation via the activation of PyUFGT through binding to tandem G-boxes in its promoter

scientific article published on 01 December 2019

The kiwifruit lycopene beta-cyclase plays a significant role in carotenoid accumulation in fruit

scientific article published on 2 July 2009

The mQTL hotspot on linkage group 16 for phenolic compounds in apple fruits is probably the result of a leucoanthocyanidin reductase gene at that locus

scientific article

The proanthocyanin-related transcription factors MYBC1 and WRKY44 regulate branch points in the kiwifruit anthocyanin pathway

scientific article published on 25 August 2020

The red sport of 'Zaosu' pear and its red-striped pigmentation pattern are associated with demethylation of the PyMYB10 promoter

scientific article published on 26 August 2014

The strawberry transcription factor FaRAV1 positively regulates anthocyanin accumulation by activation of FaMYB10 and anthocyanin pathway genes

scientific article published on 26 March 2020

Three FT and multiple CEN and BFT genes regulate maturity, flowering, and vegetative phenology in kiwifruit

scientific article

Towards social acceptability of genome-edited plants in industrialised countries? Emerging evidence from Europe, United States, Canada, Australia, New Zealand, and Japan

scientific article published in 2022

Transcriptional analysis of apple fruit proanthocyanidin biosynthesis

scientific article published on August 2012

Transcriptional regulation of flavonoid biosynthesis in nectarine (Prunus persica) by a set of R2R3 MYB transcription factors

scientific article

Transcriptome Analysis of Kiwifruit (Actinidia chinensis) Bark in Response to Armoured Scale Insect (Hemiberlesia lataniae) Feeding

scientific article published on 16 November 2015

Transcriptome analysis and transient transformation suggest an ancient duplicated MYB transcription factor as a candidate gene for leaf red coloration in peach

scientific article

Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq.

scientific article

Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants

scientific article

Two Distinct Sources of Elicited Reactive Oxygen Species in Tobacco Epidermal Cells

scientific article published on 01 September 1997

Two Y-chromosome-encoded genes determine sex in kiwifruit

scientific article published on 05 August 2019

List of works by Andrew Allan

A MYB transcription factor regulates anthocyanin biosynthesis in mangosteen (Garcinia mangostana L.) fruit during ripening

A dramatic decline in fruit citrate induced by mutagenesis of a <scp>NAC</scp> transcription factor, <i>AcNAC1</i>

A gene expression atlas for kiwifruit (Actinidia chinensis) and network analysis of transcription factors

A genome-wide expression profile of salt-responsive genes in the apple rootstock Malus zumi

A kiwifruit (Actinidia deliciosa) R2R3-MYB transcription factor modulates chlorophyll and carotenoid accumulation.

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

A metabolic perspective of selection for fruit quality related to apple domestication and improvement

AcFT promotes kiwifruit in vitro flowering when overexpressed and Arabidopsis flowering when expressed in the vasculature under its own promoter

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae

An R2R3 MYB transcription factor determines red petal colour in an Actinidia (kiwifruit) hybrid population

An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes.

An early tobacco mosaic virus-induced oxidative burst in tobacco indicates extracellular perception of the virus coat protein

An improved method for transformation of Actinidia arguta utilized to demonstrate a central role for MYB110 in regulating anthocyanin accumulation in kiwiberry

Analyses of expressed sequence tags from apple.

Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening.

Analysis of genetically modified red-fleshed apples reveals effects on growth and consumer attributes.

Apple B-box factors regulate light-responsive anthocyanin biosynthesis genes

Apple Functional Genomics

Apple skin patterning is associated with differential expression of MYB10.

Carbon starvation reduces carbohydrate and anthocyanin accumulation in red-fleshed fruit via trehalose 6-phosphate and MYB27

Carotenoid accumulation in durian (Durio zibethinus) fruit is affected by ethylene via modulation of carotenoid pathway gene expression

Characterisation of the DELLA subfamily in apple (Malus x domestica Borkh.)

Characterization and differential expression of ethylene receptor genes during fruit development and dehiscence of durian (Durio zibethinus)

Chloroplastic biosynthesis of melatonin and its involvement in protection of plants from salt stress

Comparative Transcriptome Analysis of White and Purple Potato to Identify Genes Involved in Anthocyanin Biosynthesis

Coordinated regulation of anthocyanin biosynthesis in Chinese bayberry (Myrica rubra) fruit by a R2R3 MYB transcription factor

DNA demethylation is involved in the regulation of temperature-dependent anthocyanin accumulation in peach

DNA methylation controlling abscisic acid catabolism responds to light to mediate strawberry fruit ripening

De Novo Assembly and Characterization of the Transcriptome of the Chinese Medicinal Herb, Gentiana rigescens

Dietary flavonoids from modified apple reduce inflammation markers and modulate gut microbiota in mice.

Differential Sensitivity of Fruit Pigmentation to Ultraviolet Light between Two Peach Cultivars

Differential expression within the LOX gene family in ripening kiwifruit.

Differential regulation of the anthocyanin profile in purple kiwifruit ( species)

Domestication: Colour and Flavour Joined by a Shared Transcription Factor

Ectopic Overexpression of a Novel R2R3-MYB, NtMYB2 from Chinese Narcissus Represses Anthocyanin Biosynthesis in Tobacco.

Effects of mechanical signaling on plant cell cytosolic calcium

Effects of red-leaved transgenic tobacco expressing a MYB transcription factor on two herbivorous insects,Spodoptera lituraandHelicoverpa armigera

Efficient transient transformation of suspension culture-derived apple protoplasts

Endogenous cytokinin in developing kiwifruit is implicated in maintaining fruit flesh chlorophyll levels

Engineering the anthocyanin regulatory complex of strawberry (Fragaria vesca).

Enhancing ascorbate in fruits and tubers through over-expression of the L-galactose pathway gene GDP-L-galactose phosphorylase.

Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis thaliana

Ethylene-induced modulation of genes associated with the ethylene signalling pathway in ripening kiwifruit

Flow cytometric analysis of tracheary element differentiation in Zinnia elegans cells

Functional diversification of the potato R2R3 MYB anthocyanin activators AN1, MYBA1, and MYB113 and their interaction with basic helix-loop-helix cofactors

Genome-wide analysis and expression profiles of the StR2R3-MYB transcription factor superfamily in potato (Solanum tuberosum L.).

Genome-wide analysis of coding and non-coding RNA reveals a conserved miR164-NAC regulatory pathway for fruit ripening

Genomic survey and gene expression analysis of the MYB-related transcription factor superfamily in potato (Solanum tuberosum L.).

Heat-induced oxidative activity protects suspension-cultured plant cells from low temperature damage

High temperature reduces apple fruit colour via modulation of the anthocyanin regulatory complex

Histone modification and activation by SOC1-like and drought stress-related transcription factors may regulate AcSVP2 expression during kiwifruit winter dormancy

Identification and characterisation of F3GT1 and F3GGT1, two glycosyltransferases responsible for anthocyanin biosynthesis in red-fleshed kiwifruit (Actinidia chinensis).

Identification of Genes Involved in Flavonoid Biosynthesis of Chinese Narcissus (Narcissus tazetta L. var. chinensis)

Identification of Mendel's white flower character

Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes

Identification of regulatory genes implicated in continuous flowering of longan (Dimocarpus longan L.).

In the Solanaceae, a hierarchy of bHLHs confer distinct target specificity to the anthocyanin regulatory complex

Indigenous Perspectives and Gene Editing in Aotearoa New Zealand

Isolation of a novel peroxisomal catalase gene from sugarcane, which is responsive to biotic and abiotic stresses

Kiwifruit EIL and ERF genes involved in regulating fruit ripening.

Kiwifruit SVP2 controls developmental and drought-stress pathways

Kiwifruit SVP2 gene prevents premature budbreak during dormancy

MYB transcription factors that colour our fruit

MYBA From Blueberry ( Section ) Is a Subgroup 6 Type R2R3MYB Transcription Factor That Activates Anthocyanin Production

MYBs Drive Novel Consumer Traits in Fruits and Vegetables

Map-based cloning of the pear gene MYB114 identifies an interaction with other transcription factors to coordinately regulate fruit anthocyanin biosynthesis.

Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple

Metabolic and gene expression analysis of apple (Malus x domestica) carotenogenesis.

Microarray analysis of kiwifruit (Actinidia chinensis) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae).

Molecular architectures of benzoic acid-specific type III polyketide synthases

Molecular genetics of blood-fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors.

Multiple Copies of a Simple MYB-Binding Site Confers Trans-regulation by Specific Flavonoid-Related R2R3 MYBs in Diverse Species

Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples.

Mutagenesis of kiwifruit CENTRORADIALIS-like genes transforms a climbing woody perennial with long juvenility and axillary flowering into a compact plant with rapid terminal flowering

Natural variation in monoterpene synthesis in kiwifruit: transcriptional regulation of terpene synthases by NAC and ETHYLENE-INSENSITIVE3-like transcription factors

NtMYB3, an R2R3-MYB from Narcissus, Regulates Flavonoid Biosynthesis ⬇️

Orange is not just a colour

Overexpression of the kiwifruit SVP3 gene affects reproductive development and suppresses anthocyanin biosynthesis in petals, but has no effect on vegetative growth, dormancy, or flowering time.

PbrMYB169 positively regulates lignification of stone cells in pear fruit