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List of works by Scott A. Givan

ASRP: the Arabidopsis Small RNA Project Database

scientific article

An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6.

scientific article

Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci

scientific article

Bisphenol A (BPA) in the serum of pet dogs following short-term consumption of canned dog food and potential health consequences of exposure to BPA.

scientific article published on 5 December 2016

Characterization of the rat developmental liver transcriptome

scientific article published on 19 February 2013

Computational analysis of RNA-seq

scientific article

Computational and analytical framework for small RNA profiling by high-throughput sequencing

scientific article published on 23 March 2009

Corrigendum: Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status

scientific article

Ctf3p, the Mis6 budding yeast homolog, interacts with Mcm22p and Mcm16p at the yeast outer kinetochore

scientific article

Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status

scientific article

Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes.

scientific article

Draft Genome Sequence of Prosthecomicrobium hirschii ATCC 27832T

scientific article published on 19 November 2015

Effects of exposure to bisphenol A and ethinyl estradiol on the gut microbiota of parents and their offspring in a rodent model

scientific article published on 13 September 2016

Effects of vendor and genetic background on the composition of the fecal microbiota of inbred mice

scientific article

Expression of Arabidopsis MIRNA genes

scientific article published on 22 July 2005

Genetic mapping with dispersed repeated sequences in the rice blast fungus: mapping the SMO locus.

scientific article published in September 1990

Genome Sequences of Pseudoalteromonas Strains ATCC BAA-314, ATCC 70018, and ATCC 70019.

scientific article

Genome Streamlining in a Cosmopolitan Oceanic Bacterium

scientific article

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics

article

Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting

article

Genome-wide discovery and characterization of maize long non-coding RNAs.

scientific article

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

scientific article

Genome-wide profiling and analysis of Arabidopsis siRNAs

scientific article (publication date: March 2007)

Gut Dysbiosis and Neurobehavioral Alterations in Rats Exposed to Silver Nanoparticles

scientific article

High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase

scientific article published on 14 December 2012

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

scientific article (publication date: 14 February 2007)

Intermittent severe hypoxia induces plasticity within serotonergic and catecholaminergic neurons in the neonatal rat ventrolateral medulla

scientific article published on 10 March 2016

MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana

scientific article published on 20 April 2010

Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data

scientific article

Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules

scientific article

Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria

scientific article published in June 2007

Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle.

scientific article

The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis

scientific article published in January 2007

The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases

scientific article (publication date: 18 December 2007)

The genome of woodland strawberry (Fragaria vesca)

scientific article

The influence of caging, bedding, and diet on the composition of the microbiota in different regions of the mouse gut.

scientific article

The small genome of an abundant coastal ocean methylotroph

scientific article

Toxicogenomic profiling of the hepatic tumor promoters indole-3-carbinol, 17beta-estradiol and beta-naphthoflavone in rainbow trout

scientific article

Update of ASRP: the Arabidopsis Small RNA Project database

scientific article

Use of a rainbow trout oligonucleotide microarray to determine transcriptional patterns in aflatoxin B1-induced hepatocellular carcinoma compared to adjacent liver

scientific article

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