List of works by Daniel G. Bradley

A Y-chromosome signature of hegemony in Gaelic Ireland

scientific article

A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius)

scientific article

A dynastic elite in monumental Neolithic society

scientific article published on 17 June 2020

A genome wide association scan of bovine tuberculosis susceptibility in Holstein-Friesian dairy cattle

scientific article

A genome-wide approach to identify genetic loci with a signature of natural selection in the Irish population

scientific article published on 11 August 2006

A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23.

scientific article published on 9 March 2016

A genome-wide association study for somatic cell score using the Illumina high-density bovine beadchip identifies several novel QTL potentially related to mastitis susceptibility

scientific article

A genome-wide association study of sporadic ALS in a homogenous Irish population.

scientific article published on 5 December 2007

A genomics approach to the detection of positive selection in cattle: adaptive evolution of the T-cell and natural killer cell-surface protein CD2.

scientific article

A microsatellite survey of cattle from a centre of origin: the Near East

scientific article published on 01 December 1999

A partial african ancestry for the creole cattle populations of the Caribbean

scientific article published in November 2002

A polymorphism in randomly amplified DNA that differentiates the Y chromosomes of Bos indicus and Bos taurus.

scientific article

A whole mitochondria analysis of the Tyrolean Iceman's leather provides insights into the animal sources of Copper Age clothing

scientific article

Admixture analysis of South Asian cattle

scientific article published in July 2003

Admixture and diversity in West African cattle populations

article

Admixture mapping of tuberculosis and pigmentation-related traits in an African-European hybrid cattle population

scientific article published on 15 June 2015

African pastoralism: genetic imprints of origins and migrations.

scientific article

Analysis of genome-wide copy number variation in Irish and Dutch ALS populations

scientific article published on 7 August 2008

Analysis of the hexanucleotide repeat expansion and founder haplotype at C9ORF72 in an Irish psychosis case-control sample.

scientific article

Ancient DNA suggests a recent expansion of European cattle from a diverse wild progenitor species

article

Ancient DNA, pig domestication, and the spread of the Neolithic into Europe

scientific article

Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent.

scientific article

Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent

scientific article published on 01 July 2019

Ancient genomics reveals tripartite origins of Japanese populations

scientific article published on 17 September 2021

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

scientific article published in Science

Ancient hybridization and an Irish origin for the modern polar bear matriline

scientific article

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

scientific article published on 12 August 2019

Angiogenin levels and ANG genotypes: dysregulation in amyotrophic lateral sclerosis

scientific article

Animal domestication in the era of ancient genomics

scientific article published on 07 April 2020

Animal origin of 13th-century uterine vellum revealed using noninvasive peptide fingerprinting

scientific article

Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism

scientific article

Autosomal dominant retinitis pigmentosa (ADRP): Localization of an ADRP gene to the long arm of chromosome 3

article

Autosomal dominant retinitis pigmentosa: Exclusion of a gene from extensive regions of chromosomes 6, 13, 20, and 21

article

Autosomal dominant retinitis pigmentosa: absence of the rhodopsin proline----histidine substitution (codon 23) in pedigrees from Europe

scientific article

Autosomal dominant retinitis pigmentosa: exclusion of the gene from the short arm of chromosome 1 including the region surrounding the rhesus locus

scientific article

Autosomal dominant retinitis pigmentosa: linkage to rhodopsin and evidence for genetic heterogeneity

scientific article published in September 1990

Avian resistance to Campylobacter jejuni colonization is associated with an intestinal immunogene expression signature identified by mRNA sequencing.

scientific article

Basal ganglia involvement in amyotrophic lateral sclerosis

scientific article

Bayesian inference of population expansions in domestic bovines

scientific article (publication date: 22 August 2007)

Capturing goats: documenting two hundred years of mitochondrial DNA diversity among goat populations from Britain and Ireland

scientific article

Cattle demographic history modelled from autosomal sequence variation

scientific article (publication date: 27 August 2010)

Cognitive and clinical characteristics of patients with amyotrophic lateral sclerosis carrying a C9orf72 repeat expansion: a population-based cohort study

scientific article published on 3 February 2012

Combination of multiple microsatellite data sets to investigate genetic diversity and admixture of domestic cattle

scientific article

Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

scientific article published on 24 September 2015

Comprehensive analysis of the gene encoding filaggrin uncovers prevalent and rare mutations in ichthyosis vulgaris and atopic eczema

article

Conserving livestock breed biodiversity.

scientific article

Contrasting evolution of diversity at two disease-associated chicken genes

scientific article

Cytochrome b sequences of ancient cattle and wild ox support phylogenetic complexity in the ancient and modern bovine populations

scientific article

DNA markers reveal the complexity of livestock domestication

scientific article

Definition of the cattle killer cell Ig-like receptor gene family: comparison with aurochs and human counterparts

scientific article

Delineating the genetic heterogeneity of ALS using targeted high-throughput sequencing

scientific article published on 23 July 2013

Detecting the effects of selection at the population level in six bovine immune genes

scientific article

Detection of novel germline mutations for breast cancer in non-BRCA1/2 families

scientific article published on 20 June 2015

Diagnosis of susceptibility to malignant hyperthermia with flanking DNA markers

scientific article

Differentiation of European cattle by AFLP fingerprinting

scientific article

Discovery of alpha-defensins in basal mammals

scientific article published on 2 March 2007

Documenting domestication: the intersection of genetics and archaeology

scientific article

Dual origins of dairy cattle farming--evidence from a comprehensive survey of European Y-chromosomal variation

scientific article (publication date: 6 January 2011)

Duality in Bos indicus mtDNA diversity: Support for geographical complexity in zebu domestication

Early Neolithic genomes from the eastern Fertile Crescent

scientific article

Early farmers from across Europe directly descended from Neolithic Aegeans

scientific article published on 06 June 2016

Early medieval cattle remains from a Scandinavian settlement in Dublin: genetic analysis and comparison with extant breeds

scientific article (publication date: 29 January 1999)

Epidermolysis bullosa: evidence for linkage to genetic markers on chromosome 1 in a family with the autosomal dominant simplex form

scientific article

Estimating Scandinavian and Gaelic ancestry in the male settlers of Iceland

scientific article

Evaluating the forensic informativeness of mtDNA haplogroup H sub-typing on a Eurasian scale

scientific article published in August 2005

Evidence for the hypothesis of strain formation in Pomphorhynchus laevis (Acanthocephala): an investigation using mitochondrial DNA sequences

article

Evidence for two independent domestications of cattle.

scientific article

Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus

scientific article

Evidence of positive selection on the Atlantic salmon CD3γδ gene

article

Evidence of the adaptive evolution of immune genes in chicken

scientific article

Feasibility and utility of microsatellite markers in archaeological cattle remains from a Viking Age settlement in Dublin.

scientific article published in December 2003

Gene-culture coevolution between cattle milk protein genes and human lactase genes

scientific article

Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection

scientific article

Genetic correlation between amyotrophic lateral sclerosis and schizophrenia

scientific article published on 21 March 2017

Genetic evidence for Near-Eastern origins of European cattle

scientific article (publication date: 26 April 2001)

Genetic evidence for the convergent evolution of light skin in Europeans and East Asians

scientific article

Genetic evidence of African slavery at the beginning of the trans-Atlantic slave trade

scientific article

Genetic investigation of the patrilineal kinship structure of early medieval Ireland.

scientific article published in August 2008

Genetic signatures of a Mediterranean influence in Iberian Peninsula sheep husbandry

scientific article published on 3 May 2006

Genetic stratification of pathogen-response-related and other variants within a homogeneous Caucasian Irish population

scientific article published in July 2005

Genetic structure of seven European cattle breeds assessed using 20 microsatellite markers

scientific article published on October 1998

Genome flux and stasis in a five millennium transect of European prehistory

scientific article

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

scientific article

Genome-wide association analysis of avian resistance to Campylobacter jejuni colonization identifies risk locus spanning the CDH13 gene

scientific article

Genome-wide association study for calving performance using high-density genotypes in dairy and beef cattle

scientific article published on 12 June 2015

Genome-wide association study for calving traits in Holstein-Friesian dairy cattle

scientific article

Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland

scientific article

Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago

scientific article

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

scientific article

Genomic and archaeological evidence suggest a dual origin of domestic dogs

scientific article

Genomic evidence of widespread admixture from polar bears into brown bears during the last ice age.

scientific article published on 20 February 2018

Genomic signals of migration and continuity in Britain before the Anglo-Saxons

scientific article published on 19 January 2016

Geographic distribution and frequency of a taurine Bos taurus and an indicine Bos indicus Y specific allele amongst sub-saharan African cattle breeds

scientific article published on April 2000

High concordance of bovine single nucleotide polymorphism genotypes generated using two independent genotyping strategies

scientific article published in October 2010

High-resolution mtDNA evidence for the late-glacial resettlement of Europe from an Iberian refugium

scientific article

History and integrity of thoroughbred dam lines revealed in equine mtDNA variation

scientific article

Homozygosity mapping in an Irish ALS case-control cohort describes local demographic phenomena and points towards potential recessive risk loci

scientific article published on 23 January 2015

How much is that in dog years? The advent of canine population genomics

scientific article

Independent mitochondrial origin and historical genetic differentiation in North Eastern Asian cattle

scientific article

Insular Celtic population structure and genomic footprints of migration.

scientific article

Kouprey (<i>Bos sauveli</i>) genomes unveil polytomic origin of wild Asian <i>Bos</i>

scientific article published on 06 October 2021

Livestock genetic origins: goats buck the trend.

scientific article published in May 2001

Maternal and paternal genealogy of Eurasian taurine cattle (Bos taurus).

scientific article published on 15 July 2009

Measuring European population stratification with microarray genotype data

scientific article

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

scientific article

Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus)

scientific article

Microsatellite DNA variation within and among European cattle breeds

scientific article published in 1994

Microsatellite diversity suggests different histories for Mediterranean and Northern European cattle populations

scientific article (publication date: 7 September 2005)

Microsatellite diversity, pedigree relatedness and the contributions of founder lineages to thoroughbred horses

scientific article

Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations

Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs

scientific article (publication date: 7 June 2007)

Mitochondrial DNA variation and evolution of Japanese black cattle (Bos taurus)

scientific article (publication date: November 1998)

Mitochondrial genetic variation in European, African and Indian cattle populations.

scientific article published in August 1994

Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

scientific article published in 2021

Morphological and genetic evidence for early Holocene cattle management in northeastern China.

scientific article published in January 2013

Multiparametric MRI study of ALS stratified for the C9orf72 genotype

scientific article published on 14 June 2013

Neolithic and Bronze Age migration to Ireland and establishment of the insular Atlantic genome

scientific article

Novel SNP Discovery in African Buffalo, Syncerus caffer, using high-throughput Sequencing

scientific article published on 7 November 2012

Origins and genetic legacies of the Caribbean Taino

scientific article published on 20 February 2018

Paging through history: parchment as a reservoir of ancient DNA for next generation sequencing

scientific article

Parentage and relatedness determination in farmed Atlantic salmon (Salmo salar) using microsatellite markers

Patterns of cerebral and cerebellar white matter degeneration in ALS.

scientific article published on 21 July 2014

Population genomics of the Viking world

scientific article published on 16 September 2020

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq

scientific article

Relationships between the endangered Pustertaler-Sprinzen and three related European cattle breeds as analysed with 20 microsatellite loci

scientific article published on 01 October 2000

Revisiting AFLP fingerprinting for an unbiased assessment of genetic structure and differentiation of taurine and zebu cattle

scientific article (publication date: 17 April 2014)

Runs of homozygosity and population history in cattle

scientific article

Satellite DNA polymorphisms and AFLP correlate with Bos indicus-taurus hybridization

scientific article published on 01 August 1999

Screening for replication of genome-wide SNP associations in sporadic ALS

scientific journal article

Second-generation Irish genome-wide association study for amyotrophic lateral sclerosis

scientific article published on 6 September 2014

Sequence variation in the mitochondrial DNA control region of wild African cheetahs (Acinonyx jubatus).

scientific article published in March 2001

Sequencing and analysis of an Irish human genome

scientific article published on 7 September 2010

Storytelling and story testing in domestication

scientific article (publication date: 29 April 2014)

Susceptibility of the namchi and kapsiki cattle of cameroon to trypanosome infection

scholarly article by M. D. Achukwi et al published October 1997 in Tropical Animal Health and Production

Temporal genetic variation of the red fox, Vulpes vulpes, across western Europe and the British Isles

scientific article (publication date: 4 December 2012)

The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals

article

The Longue Durée of genetic ancestry: multiple genetic marker systems and Celtic origins on the Atlantic facade of Europe

scientific article published on 12 August 2004

The Neolithic Transition in the Baltic Was Not Driven by Admixture with Early European Farmers

scientific article

The York Gospels: a 1000-year biological palimpsest

scientific article published on 25 October 2017

The differential evolutionary dynamics of avian cytokine and TLR gene classes

scientific article

The genetic origin and history of speed in the Thoroughbred racehorse.

scientific article

The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article

The mtDNA catalogue of all Portuguese autochthonous goat (Capra hircus) breeds: high diversity of female lineages at the western fringe of European distribution

scientific article published on July 2005

The origin of domestication genes in goats

scientific article published on 20 May 2020

The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269

scientific article

The phylogenetic position of the 'giant deer' Megaloceros giganteus.

scientific article

The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods

scientific article

The scale and nature of Viking settlement in Ireland from Y-chromosome admixture analysis

scientific article

UBQLN2 mutations are not a frequent cause of amyotrophic lateral sclerosis in Ireland

scientific article published on 21 August 2013

Upper Palaeolithic genomes reveal deep roots of modern Eurasians

scientific article (publication date: 16 November 2015)

Using reference databases of genetic variation to evaluate the potential pathogenicity of candidate disease variants

scientific article published on 26 March 2013

Variance components for susceptibility to Mycobacterium bovis infection in dairy and beef cattle

scientific article

Variation in chicken populations may affect the enzymatic activity of lysozyme

scientific article published on 21 October 2009

Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia.

scientific article published on 14 June 2018

Widespread horse-based mobility arose around 2,200 BCE in Eurasia

scientific article published on 6 June 2024

Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language

scientific article

Y-chromosome variation and Irish origins.

scientific article

Y-chromosomes and the extent of patrilineal ancestry in Irish surnames

scientific article

Y-specific microsatellite polymorphisms in a range of bovid species

scientific article

Zebu cattle are an exclusive legacy of the South Asia neolithic

scientific article published in January 2010

Zebu-taurine variation in Y chromosomal DNA: a sensitive assay for genetic introgression in west African trypanotolerant cattle populations

scientific article

combi.pl: a computer program to combine data sets with inconsistent microsatellite marker allele size information

scientific article

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