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List of works by Balázs Papp

A critical view of metabolic network adaptations

scientific article published on 03 December 2008

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer

scientific article

Adaptive evolution of complex innovations through stepwise metabolic niche expansion.

scientific article

An integrated approach to characterize genetic interaction networks in yeast metabolism

scientific article

An integrated view of protein evolution

scientific article

Antagonism between bacteriostatic and bactericidal antibiotics is prevalent

scientific article

Antibiotic-resistant bacteria show widespread collateral sensitivity to antimicrobial peptides

scientific article published on 24 May 2018

Antibiotics: New recipe for targeting resistance

scientific article

Bacterial evolution of antibiotic hypersensitivity.

scientific article published on 29 October 2013

Bioinformatics: from molecules to systems. A discussion meeting held at The Royal Society on 4 and 5 April 2005.

scientific article published on September 2005

Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection

scientific article

Cancer cell metabolism as new targets for novel designed therapies

scientific article published on January 2014

Chance and necessity in the evolution of minimal metabolic networks

scientific article

Chemical-genetic profiling reveals limited cross-resistance between antimicrobial peptides with different modes of action

scientific article published on 16 December 2019

Co-regulation of metabolic genes is better explained by flux coupling than by network distance

scientific article

Collateral sensitivity of antibiotic-resistant microbes.

scientific article published on 25 March 2015

Competition between transposable elements and mutator genes in bacteria

scientific article published on 23 April 2012

Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks

scientific article (publication date: 2008)

Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins

scientific article published on 12 February 2018

Does the Recombination Rate Affect the Efficiency of Purifying Selection? The Yeast Genome Provides a Partial Answer

article by Csaba Pál et al published 1 December 2001 in Molecular Biology and Evolution

Dosage sensitivity and the evolution of gene families in yeast

scientific article

Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal

scientific article published on 18 April 2017

Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling

scientific article published on 5 March 2007

Evolution of cis-regulatory elements in duplicated genes of yeast

article

Evolution of complex adaptations in molecular systems

scientific article

From passengers to drivers: Impact of bacterial transposable elements on evolvability

scientific article published on January 2013

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

scientific article

Gene loss and compensatory evolution promotes the emergence of morphological novelties in budding yeast

scientific article published in 2022

Genetic interactions reveal the evolutionary trajectories of duplicate genes

scientific article

Genome-wide analysis captures the determinants of the antibiotic cross-resistance interaction network.

scientific article published on 8 July 2014

Genome-wide analysis of the context-dependence of regulatory networks

scientific article

Genomic function (communication arising): Rate of evolution and gene dispensability

scientific article published in Nature

High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds.

scientific article published in February 2018

Highly expressed genes in yeast evolve slowly.

scientific article published on June 2001

Horizontal gene transfer depends on gene content of the host

scientific article

Hsp70-associated chaperones have a critical role in buffering protein production costs.

scientific article

Indispensability of Horizontally Transferred Genes and Its Impact on Bacterial Genome Streamlining.

scientific article published on 14 January 2016

Mapping pathways and phenotypes by systematic gene overexpression

scientific article

Metabolic modeling of endosymbiont genome reduction on a temporal scale ⬇️

scientific article published on March 2011

Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast

scientific article published in June 2004

Metabolic reconstruction and analysis for parasite genomes

scientific article published on 22 October 2007

Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells

scientific article published on 2 January 2018

ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality.

scientific article

Molecular chaperones as regulatory elements of cellular networks

scientific article

Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach.

scientific article published on 6 October 2016

Network-level architecture and the evolutionary potential of underground metabolism.

scientific article

No Evidence That Protein Noise-Induced Epigenetic Epistasis Constrains Gene Expression Evolution

scientific article published on 8 November 2016

Pathogen diversity drives the evolution of generalist MHC-II alleles in human populations

scientific article published on 31 January 2019

Perturbation of iron homeostasis promotes the evolution of antibiotic resistance.

scientific article published on 24 July 2014

Phenotypic activation to discover biological pathways and kinase substrates

scientific article published in July 2006

Phenotypic heterogeneity promotes adaptive evolution.

scientific article

Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota

scientific article published on 17 December 2018

Plasticity of genetic interactions in metabolic networks of yeast

scholarly article

Principles of metabolome conservation in animals

scientific article published on 21 August 2023

Selfish cells threaten multicellular life

scientific article published on 01 September 2000

Stochasticity in protein levels drives colinearity of gene order in metabolic operons of Escherichia coli

scientific article

Systematic genome reductions: theoretical and experimental approaches

scientific article published on 18 July 2007

Systems biology of epistasis: Shedding light on genetic interaction network “hubs”

Systems-biology approaches for predicting genomic evolution

scientific article published on 02 August 2011

The ancient mariner sails again: transposition of the human Hsmar1 element by a reconstructed transposase and activities of the SETMAR protein on transposon ends

scientific article

The dawn of evolutionary genome engineering

scientific article published on 28 May 2014

The genetic landscape of a cell

scientific article

The genomic landscape of compensatory evolution

scientific article

The metabolic domestication syndrome of budding yeast

scientific article published on 8 March 2024

Turning gold into 'junk': transposable elements utilize central proteins of cellular networks

scientific article (publication date: March 2013)

Underground metabolism: network-level perspective and biotechnological potential.

scientific article published on 21 August 2017

Use of genome-scale metabolic models in evolutionary systems biology

scientific article published on January 2011

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