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List of works by Claudio Donati

A novel computational method identifies intra- and inter-species recombination events in Staphylococcus aureus and Streptococcus pneumoniae

scientific article

A second pilus type in Streptococcus pneumoniae is prevalent in emerging serotypes and mediates adhesion to host cells

scientific article

Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract

scientific article

Alteration of Fecal Microbiota Profiles in Juvenile Idiopathic Arthritis. Associations with HLA-B27 Allele and Disease Status

scientific article (publication date: 2016)

Altered gut microbiota in Rett syndrome

scientific article published on 30 July 2016

An extended multi-locus molecular typing schema for Streptococcus pneumoniae demonstrates that a limited number of capsular switch events is responsible for serotype heterogeneity of closely related strains from different countries

scientific article

Breeding Strategy Shapes the Composition of Bacterial Communities in Female Nile Tilapia Reared in a Recirculating Aquaculture System

scientific article published on 10 September 2021

Conservation of meningococcal antigens in the genus Neisseria

scientific article published on 11 June 2013

Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts.

scientific article published on 21 March 2017

Deep sequencing in pre- and clinical vaccine research

scientific article

Diversity and Cyclical Seasonal Transitions in the Bacterial Community in a Large and Deep Perialpine Lake

scientific article

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi, Isolated from Alpine Lentic Freshwater

scientific article published on 22 November 2017

Draft Genome Sequences of 40 Pseudomonas aeruginosa Clinical Strains Isolated from the Sputum of a Single Cystic Fibrosis Patient Over an 8-Year Period.

scientific article published on 15 December 2016

Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Species Strains from a Freshwater Ecosystem

scientific article published in February 2018

Draft genome sequence of the anatoxin-a producing cyanobacterium <i>Tychonema bourrellyi</i> B0820 isolated from the epilimnion of the deep Alpine Lake Garda

scientific article published on 16 November 2023

Dynamic changes in microbiota and mycobiota during spontaneous 'Vino Santo Trentino' fermentation.

scientific article published on 18 January 2016

Dynamics and configurational entropy in the Lewis-Wahnström model for supercooled orthoterphenyl

scientific article

Epitope mapping of a bactericidal monoclonal antibody against the factor H binding protein of Neisseria meningitidis.

scientific article

Erratum: Relaxation induced by colored noise: Analytical results for multilevel systems

scientific article published on 01 March 1993

Evolution and molecular epidemiology of streptococci

scientific article published on 01 July 2015

Explaining diversity in metagenomic datasets by phylogenetic-based feature weighting

scientific article

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

scientific article

Genome sequencing of disease and carriage isolates of nontypeable Haemophilus influenzae identifies discrete population structure

scientific article published on 25 March 2014

Genomic analysis reveals the molecular basis for capsule loss in the group B Streptococcus population

scientific article

Habitat fragmentation is associated to gut microbiota diversity of an endangered primate: implications for conservation

scientific article

Insulin Resistance, Microbiota, and Fat Distribution Changes by a New Model of Vertical Sleeve Gastrectomy in Obese Rats.

scientific article

Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality

scientific article published on 17 August 2021

Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms ⬇️

scientific article

Longitudinal relaxation induced by colored noise.

scientific article published in April 1994

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.

scientific article

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

scientific article

Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approach

scientific article published on 4 August 2006

Microbiology in the post-genomic era.

scientific article published on 13 May 2008

New evidences on the altered gut microbiota in autism spectrum disorders

scientific article published on 22 February 2017

PIPE-chipSAD: A Pipeline for the Analysis of High Density Arrays of Bacterial Transcriptomes

scientific article

Pilus operon evolution in Streptococcus pneumoniae is driven by positive selection and recombination

scientific article

Population genetics and evolution of the pan-genome of Streptococcus pneumoniae

scientific article published on 13 October 2011

Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems

scientific article

Relaxation induced by colored noise. II. Homogeneous and heterogeneous correlation loss

scientific article published on 01 February 1995

Relaxation induced by colored noise: Analytical results for multilevel systems

scientific article published on 01 November 1992

Reverse vaccinology in the 21st century: improvements over the original design

scientific article published on 25 March 2013

Role of Unstable Directions in the Equilibrium and Aging Dynamics of Supercooled Liquids

scientific article published in Physical Review Letters

SaccharomycesIDentifier, SID: strain-level analysis of Saccharomyces cerevisiae populations by using microsatellite meta-patterns

scientific article

Sequence analysis of 96 genomic regions identifies distinct evolutionary lineages within CC156, the largest Streptococcus pneumoniae clonal complex in the MLST database

scientific article

Serotype IV Streptococcus agalactiae ST-452 has arisen from large genomic recombination events between CC23 and the hypervirulent CC17 lineages.

scientific article published on 14 July 2016

Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES

scientific article published on 19 December 2020

Spatial correlations of mobility and immobility in a glass-forming Lennard-Jones liquid

article

Strain profiling and epidemiology of bacterial species from metagenomic sequencing.

scientific article published on 22 December 2017

Streptococcus pneumoniae contains 3 rlrA pilus variants that are clonally related

scientific article published in March 2008

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

scientific article

Temperature drives the assembly of endophytic communities' seasonal succession

scientific article

The Hfq-dependent small noncoding RNA NrrF directly mediates Fur-dependent positive regulation of succinate dehydrogenase in Neisseria meningitidis

scientific article

The Streptococcus pneumoniae pilus-1 displays a biphasic expression pattern

scientific article (publication date: 2011)

The microbial pan-genome

scientific article

The two variants of the Streptococcus pneumoniae pilus 1 RrgA adhesin retain the same function and elicit cross-protection in vivo

scientific article

Towards a universal group B Streptococcus vaccine using multistrain genome analysis

scientific article published on October 2006

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing

scientific article

riboFrame: An Improved Method for Microbial Taxonomy Profiling from Non-Targeted Metagenomics

scientific article

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