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List of works by Victor de Lorenzo

'Touching an elephant in the darkness', or 'how to get the whole picture of biotechnology'.

scientific article

A GFP-lacZ Bicistronic Reporter System for Promoter Analysis in Environmental Gram-Negative Bacteria ⬇️

scientific article published on April 6, 2012

A Metabolic Widget Adjusts the Phosphoenolpyruvate-Dependent Fructose Influx in Pseudomonas putida.

scientific article

A Post-translational Metabolic Switch Enables Complete Decoupling of Bacterial Growth from Biopolymer Production in Engineered Escherichia coli

article by Gonzalo Durante-Rodríguez et al published 22 October 2018 in ACS Synthetic Biology

A Standardized Inverter Package Borne by Broad Host Range Plasmids for Genetic Circuit Design in Gram-Negative Bacteria

scientific article published on 18 December 2020

A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations ⬇️

scientific article published on August 18, 2011

A general system to integrate lacZ fusions into the chromosomes of gram-negative eubacteria: regulation of the Pm promoter of the TOL plasmid studied with all controlling elements in monocopy

scientific article

A la carte transcriptional regulators: unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors

scientific article

A second chromosomal copy of the catA gene endows Pseudomonas putida mt-2 with an enzymatic safety valve for excess of catechol

scientific article published on 21 January 2014

ATP Binding to the σ54-Dependent Activator XylRTriggers a Protein Multimerization Cycle Catalyzed by UAS DNA

scientific article published on 01 July 1996

Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440.

scientific article published on 20 May 2013

Activation of the toluene‐responsive regulator XylR causes a transcriptional switch between σ54 and σ70 promoters at the divergent Pr/Ps region of the TOL plasmid ⬇️

scientific article published on February 1, 1998

Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains.

scientific article

Active recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida: role of IHF and alphaCTD.

scientific article

Adaptation of the yeast URA3 selection system to gram-negative bacteria and generation of a {delta}betCDE Pseudomonas putida strain

scientific article published on February 2005

Aerobactin production as a virulence factor: a reevaluation

scientific article

An Electro-optical Device from a Biofilm Structure Created by Bacterial Activity

article by Erick Castellón et al published 17 August 2010 in Advanced Materials

An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 To Stimulate Plant Growth

article

An Implementation-Focused Bio/Algorithmic Workflow for Synthetic Biology.

scientific article

An automated DIY framework for experimental evolution of Pseudomonas putida

scientific article published on 13 October 2020

Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons

scientific article published on January 1994

Analysis of Pseudomonas gene products using lacIq/Ptrp-lac plasmids and transposons that confer conditional phenotypes

article

Antibiotics from gram-negative bacteria: do they play a role in microbial ecology?

article by Victor de Lorenzo & Alfredo Aguilar published June 1984 in Trends in Biochemical Sciences

ArsH protects Pseudomonas putida from oxidative damage caused by exposure to arsenic

scientific article published on 23 March 2020

Arsenate transport and reduction in the hyper-tolerant fungus Aspergillus sp. P37.

scientific article

Association of dnt genes of Burkholderia sp. DNT with the substrate-blind regulator DntR draws the evolutionary itinerary of 2,4-dinitrotoluene biodegradation

scientific article

Autotransporters as scaffolds for novel bacterial adhesins: surface properties of Escherichia coli cells displaying Jun/Fos dimerization domains.

scientific article

Bacterial transcription factors involved in global regulation

scientific article published in 1999

Beautiful is not (necessarily) right: Overcoming the Phryne's trial syndrome ⬇️

scientific article published on December 1, 2010

Beware of metaphors: Chasses and orthogonality in synthetic biology ⬇️

scientific article published on January 1, 2011

Binding of the Fur (ferric uptake regulator) repressor of Escherichia coli to arrays of the GATAAT sequence

scientific article published on 01 October 1998

Bioaccumulation of heavy metals with protein fusions of metallothionein to bacteriol OMPs

scientific article published on 01 October 1998

Biología sintética: la ingeniería al asalto de la complejidad biológica

Bioremediation 3.0: Engineering pollutant-removing bacteria in the times of systemic biology

scientific article

Bioremediation at a global scale: from the test tube to planet Earth

scientific article

Biotechnological domestication of pseudomonads using synthetic biology.

scientific article published on May 2014

Biotransformation of d-xylose to d-xylonate coupled to medium-chain-length polyhydroxyalkanoate production in cellobiose-grown Pseudomonas putida EM42

scientific article published on 03 May 2020

Blueprint of an oil-eating bacterium

Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor ⬇️

scientific article published on May 15, 2012

COVER: a priori estimation of coverage for metagenomic sequencing

scientific article published on 17 April 2012

CRISPR/Cas9-enhanced ssDNA recombineering for Pseudomonas putida

scientific article published on 25 June 2019

Cell regulation

CellShape: A user-friendly image analysis tool for quantitative visualization of bacterial cell factories inside.

scientific article

Chassis organism fromCorynebacterium glutamicum: The way towards biotechnological domestication of Corynebacteria

scholarly article by Victor de Lorenzo published 8 October 2014 in Biotechnology Journal

Chemical reactivity drives spatiotemporal organisation of bacterial metabolism

scientific article published on 04 December 2014

Chromosomal integration of transcriptional fusions

scientific article published in January 2014

Clues and consequences of DNA bending in transcription

scientific article

Combining Genetic Circuit and Microbial Growth Kinetic Models: A Challenge for Biological Modelling

Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray

scientific article published in January 2006

Confidence, tolerance, and allowance in biological engineering: the nuts and bolts of living things

scientific article

Consent insufficient for data release-Response

scientific article published on 01 May 2019

Contextual dependencies expand the re-usability of genetic inverters

scientific article published in 2021

Cooperative amino acid changes shift the response of the σ54-dependent regulator XylR from natural m-xylene towards xenobiotic 2,4-dinitrotoluene

article

Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida.

scientific article

Data on the standardization of a cyclohexanone-responsive expression system for Gram-negative bacteria

scientific article

Deciphering environmental signal integration in sigma54-dependent promoters with a simple mathematical model

scientific article published on October 2003

Deciphering the action of aromatic effectors on the prokaryotic enhancer-binding protein XylR: a structural model of its N-terminal domain.

scientific article published in January 2002

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2.

scientific article published on 16 August 2012

Deconvolution of Gene Expression Noise into Spatial Dynamics of Transcription Factor-Promoter Interplay

scientific article published on 29 March 2017

Designing microbial systems for gene expression in the field

scientific article published on September 1994

Digitalizing heterologous gene expression in Gram-negative bacteria with a portable ON/OFF module

scientific article published on 01 December 2019

Distribution and phylogeny of hexachlorocyclohexane-degrading bacteria in soils from Spain

scientific article

Dynamics of Pseudomonas putida biofilms in an upscale experimental framework

article

Editorial overview: Microbial systems biology: systems biology prepares the ground for successful synthetic biology

scientific article published on 24 August 2016

Effector Specificity Mutants of the Transcriptional Activator NahR of Naphthalene DegradingPseudomonasDefine Protein Sites Involved in Binding of Aromatic Inducers

scientific article published in Journal of Biological Chemistry

Emergence of novel functions in transcriptional regulators by regression to stem protein types.

scientific article

Endogenous stress caused by faulty oxidation reactions fosters evolution of 2,4-dinitrotoluene-degrading bacteria

scientific article (publication date: August 2013)

Engineering Gram-Negative Microbial Cell Factories Using Transposon Vectors

scientific article

Engineering Multicellular Logic in Bacteria with Metabolic Wires ⬇️

scientific article published on July 22, 2013

Engineering a mouse metallothionein on the cell surface of Ralstonia eutropha CH34 for immobilization of heavy metals in soil

scientific article published on 01 June 2000

Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene ⬇️

scientific article published on November 10, 2012

Engineering input/output nodes in prokaryotic regulatory circuits

scientific article published on 07 June 2010

Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440

article

Engineering of alkyl- and haloaromatic-responsive gene expression with mini-transposons containing regulated promoters of biodegradative pathways of Pseudomonas

article

Engineering outer-membrane proteins in Pseudomonas putida for enhanced heavy-metal bioadsorption

scientific article published on 01 April 2000

Engineering the soil bacterium Pseudomonas putida for arsenic methylation

scientific article (publication date: July 2013)

Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment

scientific article

EnvMine: a text-mining system for the automatic extraction of contextual information

scientific article

Environmental biosafety in the age of synthetic biology: do we really need a radical new approach? Environmental fates of microorganisms bearing synthetic genomes could be predicted from previous data on traditionally engineered bacteria for in situ

scientific article

Environmental microbiology to the rescue of planet earth

scientific article published on 24 March 2018

Evidence of an Unusually Long Operator for the Fur Repressor in the Aerobactin Promoter of Escherichia coli

scientific article published in Journal of Biological Chemistry

Evidence of in vivo cross talk between the nitrogen-related and fructose-related branches of the carbohydrate phosphotransferase system of Pseudomonas putida

scientific article published on 22 February 2008

Evidence of multiple regulatory functions for the PtsN (IIA(Ntr)) protein of Pseudomonas putida

scientific article

Evolutionary tinkering vs. rational engineering in the times of synthetic biology

scholarly article by Victor de Lorenzo published 12 August 2018 in Life sciences, society and policy

Evolving metabolism of 2,4-dinitrotoluene triggers SOS-independent diversification of host cells

scientific article published on 03 December 2018

Expanding the boolean logic of the prokaryotic transcription factor XylR by functionalization of permissive sites with a protease-target sequence.

scientific article

Exploiting geometric similarity for statistical quantification of fluorescence spatial patterns in bacterial colonies

scientific article published on 03 June 2020

Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution.

scientific article

Exploring the microbial biodegradation and biotransformation gene pool

scientific article

Export of autotransported proteins proceeds through an oligomeric ring shaped by C-terminal domains

scientific article

Expression vectors and delivery systems

scientific article published on 01 October 2000

Extracellular export of Shiga toxin B-subunit/haemolysin A (C-terminus) fusion protein expressed in Salmonella typhimurium aroA-mutant and stimulation of B-subunit specific antibody responses in mice

scientific article published in December 1992

Formation of disulphide bonds during secretion of proteins through the periplasmic-independent type I pathway

scientific article published on 01 April 2001

Freeing Pseudomonas putida KT2440 of its proviral load strengthens endurance to environmental stresses

scientific article published on 2 June 2014

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions

scientific article published on 27 May 2016

From the phosphoenolpyruvate phosphotransferase system to selfish metabolism: a story retraced in Pseudomonas putida

scientific article published on 29 May 2014

From the selfish gene to selfish metabolism: revisiting the central dogma

scientific article published on 14 January 2014

From the test tube to the environment - and back

scientific article published in January 2013

Fructose 1-Phosphate Is the Preferred Effector of the Metabolic Regulator Cra of Pseudomonas putida

scientific article

Fructose 1-phosphate is the one and only physiological effector of the Cra (FruR) regulator of Pseudomonas putida.

scientific article published on 4 April 2014

Functional analysis of PvdS, an iron starvation sigma factor of Pseudomonas aeruginosa

scientific journal article

Functional analysis of the integration host factor site of the σ(54) Pu promoter of Pseudomonas putida by in vivo UV imprinting

scientific article

Functional coexistence of twin arsenic resistance systems in Pseudomonas putida KT2440.

scientific article published on 29 April 2014

Functional domains of the TOL plasmid transcription factor XylS

scientific article

Functional transplantation of the sumoylation machinery into Escherichia coli

scientific article

Genes that move the window of viability of life: lessons from bacteria thriving at the cold extreme: mesophiles can be turned into extremophiles by substituting essential genes

scientific article published in January 2011

Genetic engineering strategies for environmental applications

scientific article published on June 1, 1992

Genetic evidence of distinct physiological regulation mechanisms in the sigma(54) Pu promoter of Pseudomonas putida

scientific article

Genetic evidence of separate repressor and activator activities of the XylR regulator of the TOL plasmid, pWW0, of Pseudomonas putida.

scientific article

Genetic evidence that catabolites of the Entner-Doudoroff pathway signal C source repression of the sigma54 Pu promoter of Pseudomonas putida

scientific article published on December 2004

Genetic programming of catalytic Pseudomonas putida biofilms for boosting biodegradation of haloalkanes

scientific article published on 24 November 2015

Genetically modified organisms for the environment: stories of success and failure and what we have learned from them.

scientific article

Genome reduction boosts heterologous gene expression in Pseudomonas putida

scientific article

Genome-wide protein-DNA interaction site mapping in bacteria using a double-stranded DNA-specific cytosine deaminase

scientific article published on 01 June 2022

Getting out: protein traffic in prokaryotes

scientific article published on April 2004

Gross transcriptomic analysis of Pseudomonas putida for diagnosing environmental shifts

scientific article published on 07 April 2019

Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray.

scientific article

Growth-dependent Phosphorylation of the PtsN (EIINtr) Protein ofPseudomonas putida

scientific article published in Journal of Biological Chemistry

Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis.

scientific article published in December 2003

High-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2.

scientific article published on 16 September 2015

IS1-mediated mobility of the aerobactin system of pColV-K30 in Escherichia coli

scientific article published in August 1988

Identification of a cis-acting Sequence within the Pm Promoter of the TOL Plasmid which Confers XylS-mediated Responsiveness to Substituted Benzoates

Identification of a γ-hexachlorocyclohexane dehydrochlorinase (LinA) variant with improved expression and solubility properties

Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors ⬇️

article by Pablo I Nikel & Victor de Lorenzo published January 2013 in Journal of Biotechnology

Implementing an OR–NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli ⬇️

scientific article published on May 17, 2011

Improvement of recombinant protein yield by a combination of transcriptional amplification and stabilization of gene expression.

scientific article published on October 2002

Improving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid

article

In Vitro Activities of an N-terminal Truncated Form of XylR, a σ54-dependent Transcriptional Activator of Pseudomonas putida

scientific article published on 01 May 1996

In situ detection of aromatic compounds with biosensor Pseudomonas putida cells preserved and delivered to soil in water-soluble gelatin capsules

article published in 2010

In vivo UV laser footprinting of the Pseudomonas putidasigma 54Pu promoter reveals that integration host factor couples transcriptional activity to growth phase

scientific article

In vivo and in vitro effects of (p)ppGpp on the sigma(54) promoter Pu of the TOL plasmid of Pseudomonas putida.

scientific article published on September 2000

In vivo drafting of single-chain antibodies for regulatory duty on the sigma54-promoter Pu of the TOL plasmid

scientific article published in June 2006

Increasing signal specificity of the TOL network of Pseudomonas putida mt-2 by rewiring the connectivity of the master regulator XylR

scientific article

Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2.

scientific article published in September 2005

Integration host factor suppresses promiscuous activation of the sigma 54-dependent promoter Pu of Pseudomonas putida

scientific article

Interplay of the PtsN (EIIA(Ntr)) protein of Pseudomonas putida with its target sensor kinase KdpD.

scientific article published on 30 July 2015

Involvement of the FtsH (HflB) protease in the activity of sigma54 promoters

scientific article published on 01 January 1999

Isolation and characterization of microcin E 492 fromKlebsiella pneumoniae

scientific article published on 01 September 1984

It's the metabolism, stupid!

article published in 2015

Linking Engineered Cells to Their Digital Twins: A Version Control System for Strain Engineering

scientific article published on 03 March 2020

Linking genes to microbial growth kinetics: an integrated biochemical systems engineering approach

scientific article published on 16 February 2011

MetaRouter: bioinformatics for bioremediation

scientific article

Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440.

scientific article published on 22 August 2013

Metabolic engineering of bacteria for environmental applications: construction of Pseudomonas strains for biodegradation of 2-chlorotoluene

scientific article

Metal ion regulation of gene expression. Fur repressor-operator interaction at the promoter region of the aerobactin system of pColV-K30.

scientific article published in October 1988

Microbial Biotechnology-2020.

scientific article published on 11 August 2016

Microbial responses to environmental arsenic

scientific article published on 07 January 2009

Microbial systems biology: bottom up and top down

scientific article published in 2009

Mining Environmental Plasmids for Synthetic Biology Parts and Devices.

scientific article published on February 2015

Mining logic gates in prokaryotic transcriptional regulation networks

scientific article

Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene

scientific article published on 07 November 2019

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida

scientific article

Modulating Heterologous Gene Expression with Portable mRNA-Stabilizing 5′-UTR Sequences

article

Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins

scientific article

Monitoring intracellular levels of XylR in Pseudomonas putida with a single-chain antibody specific for aromatic-responsive enhancer-binding proteins.

scientific article

Multiple-Site Diversification of Regulatory Sequences Enables Interspecies Operability of Genetic Devices

scientific article published on 18 December 2019

Myriads of protein families, and still counting

scientific article published in 2003

NanoPad: an integrated platform for bacterial production of camel nanobodies aimed at detecting environmental biomarkers

scientific article

Neutralization of enteric coronaviruses with Escherichia coli cells expressing single-chain Fv-autotransporter fusions.

scientific article published on December 2003

Nitrogen regulation of the xyl genes of Pseudomonas putida mt-2 propagates into a significant effect of nitrate on m-xylene mineralization in soil

scientific article published on 26 August 2016

Noise and robustness in prokaryotic regulatory networks

scientific article published on January 2010

Non-disruptive release of Pseudomonas putida proteins by in situ electric breakdown of intact cells

Novel physiological modulation of the Pu promoter of TOL plasmid: negative regulatory role of the TurA protein of Pseudomonas putida in the response to suboptimal growth temperatures.

scientific article

Osmotic stress limits arsenic hypertolerance in Aspergillus sp. P37

scientific article published on 19 June 2007

Peer Reviewed: Genetic Engineering: The Frontier of Bioremediation ⬇️

scientific article published on March 1, 1999

Phenotypic knockouts of selected metabolic pathways by targeting enzymes with camel-derived nanobodies (V HH s)

scientific article published on 15 April 2015

Physical Forces Shape Group Identity of Swimming Pseudomonas putida Cells

scientific article

Physical and Functional Analysis of the Prokaryotic Enhancer of the σ54-promoters of the TOL Plasmid ofPseudomonas putida

article

Physiological stress of intracellular Shigella flexneri visualized with a metabolic sensor fused to a surface-reporter system.

scientific article

Pipelines for New Chemicals: a strategy to create new value chains and stimulate innovation-based economic revival in Southern European countries

scientific article published in January 2014

Plastic waste as a novel substrate for industrial biotechnology

scientific article

Predicting microbial growth kinetics with the use of genetic circuit models

Probing secretion and translocation of a beta-autotransporter using a reporter single-chain Fv as a cognate passenger domain.

scientific article

Problems with metagenomic screening.

scientific article

Production and characterization of a recombinant single-chain antibody (scFv) for tracing the σ54 factor of Pseudomonas putida.

scientific article

Production of functional single-chain Fv antibodies in the cytoplasm of Escherichia coli

scientific article

Promoter Fusions with Optical Outputs in Individual Cells and in Populations

article published in 2014

Promoters in the environment: transcriptional regulation in its natural context

scientific article

Propagation of Recombinant Genes through Complex Microbiomes with Synthetic Mini-RP4 Plasmid Vectors

scientific article published in 2022

Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression.

scientific article published on 11 November 2014

Pseudomonas aeruginosa: the making of a pathogen

scientific article published on 9 October 2014

Pseudomonas entering the post-genomic era

scientific article published on 01 June 2000

Pseudomonas putida KT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways

scientific article published on 8 September 2015

Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response.

scientific article published on 6 October 2015

Pyridine nucleotide transhydrogenases enable redox balance of Pseudomonas putida during biodegradation of aromatic compounds

scientific article published on 27 June 2016

Quantitative assessment of morphological traits of planktonic bacterial aggregates

scientific article published on 28 September 2020

Quantitative, non-disruptive monitoring of transcription in single cells with a broad-host range GFP-luxCDABE dual reporter system

scientific article

Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida

scientific article

Rationally rewiring the connectivity of the XylR/Pu regulatory node of the m-xylene degradation pathway in Pseudomonas putida.

scientific article published on 10 March 2016

Recombinant bacteria for environmental release: what went wrong and what we have learnt from it.

scientific article published on January 2009

Recombination-Independent Genome Editing through CRISPR/Cas9-Enhanced TargeTron Delivery

scientific article published on 03 September 2019

Reconfiguration of metabolic fluxes in Pseudomonas putida as a response to sub-lethal oxidative stress

scientific article published on 11 January 2021

Recruitment of RNA polymerase is a rate-limiting step for the activation of the sigma(54) promoter Pu of Pseudomonas putida.

scientific article

Recruitment of σ54-RNA Polymerase to thePuPromoter ofPseudomonas putidathrough Integration Host Factor-mediated Positioning Switch of α Subunit Carboxyl-terminal Domain on an UP-like Element

scientific article published in Journal of Biological Chemistry

Refactoring the Conjugation Machinery of Promiscuous Plasmid RP4 into a Device for Conversion of Gram-Negative Isolates to Hfr Strains

publication published on 22 March 2021

Refactoring the Embden-Meyerhof-Parnas Pathway as a Whole of Portable GlucoBricks for Implantation of Glycolytic Modules in Gram-Negative Bacteria

scientific article published on 25 January 2017

Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida

scientific article published on 8 September 2010

Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals

scientific article

Regulatory tasks of the phosphoenolpyruvate-phosphotransferase system of Pseudomonas putida in central carbon metabolism

scientific article

Reverse Engineering of an Aspirin-Responsive Transcriptional Regulator in Escherichia coli

scientific article published on 02 August 2019

Ribonucleases control distinct traits of Pseudomonas putida lifestyle

scientific article published on 21 October 2020

Robustness of Pseudomonas putida KT2440 as a host for ethanol biosynthesis

scientific article published on 23 February 2014

Role of ptsO in carbon-mediated inhibition of the Pu promoter belonging to the pWW0 Pseudomonas putida plasmid

scientific article

SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities

scientific article published on 11 November 2014

SEVA 3.1: enabling interoperability of DNA assembly among the SEVA, BioBricks and Type IIS restriction enzyme standards

scientific article published on 25 July 2020

Secretion of proteins with dimerization capacity by the haemolysin type I transport system of Escherichia coli

scientific article

Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoter

scientific article

Sinorhizobium meliloti fur-like (Mur) protein binds a fur box-like sequence present in the mntA promoter in a manganese-responsive manner

scientific article

Spatial organization of the gene expression hardware in Pseudomonas putida

scientific article published on 11 March 2019

Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release

scientific article

Stenosis triggers spread of helical Pseudomonas biofilms in cylindrical flow systems

scientific article

Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt‐2 exposed to m‐xylene ⬇️

scientific article published on August 16, 2012

Streamlining of a Pseudomonas putida genome using a combinatorial deletion method based on minitransposon insertion and the Flp-FRT recombination system

scientific article

Structural tolerance of bacterial autotransporters for folded passenger protein domains

scientific article

Subtractive hybridization reveals a high genetic diversity in the fish pathogen Photobacterium damselae subsp. piscicida: evidence of a SXT-like element

scientific article published in August 2005

Surveying biotransformations with à la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes

scientific article published on March 2006

Synthetic Biology for Terraformation Lessons from Mars, Earth, and the Microbiome

scientific article published on 09 February 2020

Synthetic biology gains momentum in Europe

scientific article published on September 2010

Synthetic biology: challenges ahead

scientific article published in January 2006

Synthetic biology: discovering new worlds and new words

scientific article published on September 2008

Synthetic biology: something old, something new …

scholarly article by Victor de Lorenzo published 9 March 2010 in BioEssays

Synthetic bugs on the loose: containment options for deeply engineered (micro)organisms.

scientific article published on 10 February 2016

Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology

scientific article (publication date: 16 July 2012)

Systems biology approaches to bioremediation

scientific article

Testing the limits of biological tolerance to arsenic in a fungus isolated from the River Tinto.

scientific article published in February 2003

The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP.

scientific article

The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress

scientific article

The IHF regulon of exponentially growing Pseudomonas putida cells

scientific article

The IIANtr (PtsN) protein of Pseudomonas putida mediates the C source inhibition of the sigma54-dependent Pu promoter of the TOL plasmid

scientific article published on May 1999

The Logic of Decision Making in Environmental Bacteria

The Metabolic Redox Regime of Pseudomonas putida Tunes Its Evolvability toward Novel Xenobiotic Substrates

scientific article published in 2018

The RNA chaperone Hfq enables the environmental stress tolerance super-phenotype of Pseudomonas putida

scientific article published on 16 September 2015

The Ssr protein (T1E_1405) from Pseudomonas putida DOT-T1E enables oligonucleotide-based recombineering in platform strain P. putida EM42.

scientific article published on July 2016

The Standard European Vector Architecture (SEVA) Plasmid Toolkit

scientific article published on 01 January 2014

The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes

scientific article published on 23 November 2012

The Synthetic Microbiology Caucus: a fresh channel for exploring new ideas, challenging conventional wisdom and fostering community projects

The Upstream-activating Sequences of the σ54PromoterPuofPseudomonas putidaFilter Transcription Readthrough from Upstream Genes

scientific article published in Journal of Biological Chemistry

The Wsp intermembrane complex mediates metabolic control of the swim-attach decision of Pseudomonas putida

scientific article published on 09 June 2020

The amino-terminal domain of the prokaryotic enhancer-binding protein XylR is a specific intramolecular repressor

scientific article

The ancestral role of the phosphoenolpyruvate–carbohydrate phosphotransferase system (PTS) as exposed by comparative genomics

scientific article published in 2007

The behavior of bacteria designed for biodegradation

scientific article published on December 1994

The black cat/white cat principle of signal integration in bacterial promoters

scientific article

The differential response of thePbenpromoter ofPseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts inm-xylene biodegradation

article

The environmental fate of organic pollutants through the global microbial metabolism

scientific article published on 5 June 2007

The essential HupB and HupN proteins of Pseudomonas putida provide redundant and nonspecific DNA-bending functions

scientific article

The faulty SOS response of Pseudomonas putida KT2440 stems from an inefficient RecA-LexA interplay

scientific article published on 03 January 2021

The four Fs of the knowledge-based BioEconomy – A homage to Christian Patermann

scientific article published in 2022

The genomes of Pseudomonas encode a third HU protein

scientific article published on 01 May 2002

The glycerol-dependent metabolic persistence of Pseudomonas putida KT2440 reflects the regulatory logic of the GlpR repressor.

scientific article

The grammar of (micro)biological diversity

scientific article published on 01 November 2002

The important versus the exciting: reining contradictions in contemporary biotechnology

scientific article published on 03 December 2018

The interplay of EIIANtr with C-source regulation of the Pu promoter of Pseudomonas putida mt-2

scientific article published on 05 October 2018

The interplay of the EIIA(Ntr) component of the nitrogen-related phosphotransferase system (PTS(Ntr)) of Pseudomonas putida with pyruvate dehydrogenase

scientific article

The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene

scientific article

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms

scientific article published on 16 March 2011

The long journey towards standards for engineering biosystems: Are the Molecular Biology and the Biotech communities ready to standardise?

scientific article published on 26 April 2020

The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes

scientific article published in April 2006

The metabolic cost of flagellar motion in Pseudomonas putida KT2440.

scientific article published on 18 November 2013

The metabolic redox regime of Pseudomonas putida tunes its evolvability towards novel xenobiotic substrates

The organization of the Pm promoter of the TOL plasmid reflects the structure of its cognate activator protein XylS

scientific article published on 01 September 1994

The organization of the microbial biodegradation network from a systems-biology perspective

scientific article

The pWW0 plasmid imposes a stochastic expression regime to the chromosomal ortho pathway for benzoate metabolism in Pseudomonas putida

scientific article published in July 2014

The phosphotransferase system formed by PtsP, PtsO, and PtsN proteins controls production of polyhydroxyalkanoates in Pseudomonas putida

scientific article published on 6 April 2007

The private life of environmental bacteria: pollutant biodegradation at the single cell level

scientific article published on 16 January 2014

The quest for the minimal bacterial genome.

scientific article published on 20 September 2016

The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid.

scientific article published in June 2010

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

scientific article

The role of the interdomain B linker in the activation of the XylR protein of Pseudomonas putida

scientific article published in October 2000

The role of thiol species in the hypertolerance of Aspergillus sp. P37 to arsenic.

scientific article published on 13 September 2004

The second coming of physics into (micro)biology

scientific article published in 2005

The sigma54 regulon (sigmulon) of Pseudomonas putida

scientific article published in December 2003

The ten grand challenges of synthetic life

scientific article

The two paralogue phoN (phosphinothricin acetyl transferase) genes of Pseudomonas putida encode functionally different proteins

scientific article published on 12 February 2015

The ultimate rendezvous: microbial ecology meets industrial biotechnology

TheTOLnetwork ofPseudomonas putidamt‐2 processes multiple environmental inputs into a narrowresponse space ⬇️

scientific article published on November 22, 2012

Thioredoxin fusions increase folding of single chain Fv antibodies in the cytoplasm of Escherichia coli: evidence that chaperone activity is the prime effect of thioredoxin

scientific article published on 6 January 2006

Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida

article

Toward unrestricted use of public genomic data:

scientific article

Towards a global biotechnology scenario

scholarly article by Victor de Lorenzo published December 2012 in Current Opinion in Biotechnology

Towards a vaccine candidate against Shigella dysenteriae 1: expression of the Shiga toxin B-subunit in an attenuated Shigella flexneri aroD carrier strain.

scientific article

Towards functional orthogonalisation of protein complexes: individualisation of GroEL monomers leads to distinct quasihomogeneous single rings.

scientific article

Tracing explosives in soil with transcriptional regulators of Pseudomonas putida evolved for responding to nitrotoluenes.

scientific article published on May 2008

Transcription factor levels enable metabolic diversification of single cells of environmental bacteria

scientific article published on 04 December 2015

Transcription regulation and environmental adaptation in bacteria

scientific article published on 01 June 2003

Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteins

scientific article published on 15 December 2005

Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene

scientific article published on 22 February 2006

Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA.

scientific article published in August 2008

Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes

scientific article published on 5 September 2013

Transient XylR binding to the UAS of the Pseudomonas putida sigma54 promoter Pu revealed with high intensity UV footprinting in vivo

scientific article published on December 2003

Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria

scientific article

Uncoupling of choline-O-sulphate utilization from osmoprotection in Pseudomonas putida

scientific article published on 01 December 2006

VTR expression cassettes for engineering conditional phenotypes in Pseudomonas: activity of the Pu promoter of the TOL plasmid under limiting concentrations of the XylR activator protein

scientific article

Versioning biological cells for trustworthy cell engineering

scientific article published on 09 February 2022

Vestigialization of arsenic resistance phenotypes/genotypes inChromobacterium violaceumstrains thriving in pristine Brazilian sites

article

Volatilization of arsenic from polluted soil by Pseudomonas putida engineered for expression of the arsM Arsenic(III) S-adenosine methyltransferase gene

scientific article published on 14 August 2014

Whole cell- and protein-based biosensors for the detection of bioavailable heavy metals in environmental samples

Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae

scientific article published on 11 March 2013

Widening functional boundaries of the σ(54) promoter Pu of Pseudomonas putida by defeating extant physiological constraints.

scientific article

XylS domain interactions can be deduced from intraallelic dominance in double mutants of Pseudomonas putida

scientific article

m-xylene-responsive Pu-PnifH hybrid sigma54 promoters that overcome physiological control in Pseudomonas putida KT2442.

scientific article

pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes.

scientific article

ssDNA recombineering boosts in vivo evolution of nanobodies displayed on bacterial surfaces

scientific article published on 07 October 2021

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