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List of works by Ildefonso Cases

Beyond 100 genomes

scientific article

BioLayout(Java): versatile network visualisation of structural and functional relationships

scientific article published in January 2005

Bionemo: molecular information on biodegradation metabolism

scientific article

CARGO: a web portal to integrate customized biological information

scientific article published on 5 May 2007

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics

scientific article

CoGenT++: an extensive and extensible data environment for computational genomics

scientific article

Deconstruction of DNA Methylation Patterns During Myogenesis Reveals Specific Epigenetic Events in the Establishment of the Skeletal Muscle Lineage

article published in 2015

Design of a solubilization pathway for recombinant polypeptides in vivo through processing of a bi-protein with a viral protease.

scientific article

Early and late responses of TOL promoters to pathway inducers: identification of postexponential promoters in Pseudomonas putida with lacZ-tet bicistronic reporters

scientific article

Emergence and evolutionary analysis of the human DDR network: implications in comparative genomics and downstream analyses

scientific article published on 16 January 2014

Evidence of multiple regulatory functions for the PtsN (IIA(Ntr)) protein of Pseudomonas putida

scientific article

Expression systems and physiological control of promoter activity in bacteria

scientific article

Functional analysis of the integration host factor site of the σ(54) Pu promoter of Pseudomonas putida by in vivo UV imprinting

scientific article

Gene Expression Profiling Supports the Neural Crest Origin of Adult Rodent Carotid Body Stem Cells and Identifies CD10 as a Marker for Mesectoderm-Committed Progenitors.

scientific article

Gene expression profiling in hearts of diabetic mice uncovers a potential role of estrogen-related receptor γ in diabetic cardiomyopathy

scientific article

Gene order in Prokaryotes: conservation and implications

article

Genetic evidence of distinct physiological regulation mechanisms in the sigma(54) Pu promoter of Pseudomonas putida

scientific article

Genetically modified organisms for the environment: stories of success and failure and what we have learned from them.

scientific article

Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis.

scientific article published in December 2003

Involvement of sigma 54 in exponential silencing of the Pseudomonas putida TOL plasmid Pu promoter.

scientific article

Molecular evolution of multiple-level control of heme biosynthesis pathway in animal kingdom

scientific article

Myriads of protein families, and still counting

scientific article published in 2003

Notch-regulated miR-223 targets the aryl hydrocarbon receptor pathway and increases cytokine production in macrophages from rheumatoid arthritis patients

scientific article published on 3 February 2016

Promoters in the environment: transcriptional regulation in its natural context

scientific article

Role of ptsO in carbon-mediated inhibition of the Pu promoter belonging to the pWW0 Pseudomonas putida plasmid

scientific article

SIREs: searching for iron-responsive elements.

scientific article

Serine/threonine kinases and E2-ubiquitin conjugating enzymes in Planctomycetes: unexpected findings.

scientific article published on 06 August 2013

Systemic approaches to biodegradation

scientific article

The IIANtr (PtsN) protein of Pseudomonas putida mediates the C source inhibition of the sigma54-dependent Pu promoter of the TOL plasmid

scientific article published on May 1999

The ancestral role of the phosphoenolpyruvate–carbohydrate phosphotransferase system (PTS) as exposed by comparative genomics

scientific article published in 2007

The black cat/white cat principle of signal integration in bacterial promoters

scientific article

The genomes of Pseudomonas encode a third HU protein

scientific article published on 01 May 2002

The grammar of (micro)biological diversity

scientific article published on 01 November 2002

The limits to genomic predictions: role of sigma(N) in environmental stress survival of Pseudomonas putida.

scientific article

The phosphotransferase system formed by PtsP, PtsO, and PtsN proteins controls production of polyhydroxyalkanoates in Pseudomonas putida

scientific article published on 6 April 2007

The sigma54 regulon (sigmulon) of Pseudomonas putida

scientific article published in December 2003

Transcription regulation and environmental adaptation in bacteria

scientific article published on 01 June 2003

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