List of works - Michael Y. Galperin

Cyclic di-GMP: the first 25 years of a universal bacterial second messenger

scientific article

Expanded microbial genome coverage and improved protein family annotation in the COG database

scientific article

C-di-GMP: the dawning of a novel bacterial signalling system

scientific article

PilZ domain is part of the bacterial c-di-GMP binding protein

scientific article

Structural classification of bacterial response regulators: diversity of output domains and domain combinations

scientific article published in June 2006

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

scientific article

A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts

scientific article

'Conserved hypothetical' proteins: prioritization of targets for experimental study

scientific article

Bacterial signal transduction network in a genomic perspective

scientific article

Who's your neighbor? New computational approaches for functional genomics

scientific article

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

scientific article

A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia

scientific article

Diversity of structure and function of response regulator output domains

scientific article published on March 11, 2010

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

scientific article published on August 1, 1997

The cyanobacterial genome core and the origin of photosynthesis

scholarly article

The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold

scientific article

Origin of first cells at terrestrial, anoxic geothermal fields

scientific article

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

scientific article

House cleaning, a part of good housekeeping

scientific article

Analogous Enzymes: Independent Inventions in Enzyme Evolution

scientific article published on August 1, 1998

Sodium ion cycle in bacterial pathogens: evidence from cross-genome comparisons

scientific article

Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia

scientific article

Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes

scientific article

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

scientific article

A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases

scientific article (publication date: August 1998)

From complete genome sequence to 'complete' understanding?

scientific article

Bacterial cellulose biosynthesis: diversity of operons, subunits, products, and functions

scientific article published on June 12, 2015

Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases

scientific article published in May 2003

Inventing the dynamo machine: the evolution of the F-type and V-type ATPases

scientific article published in November 2007

A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family

scientific article

Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea

scientific article

Prokaryotic genomes: the emerging paradigm of genome-based microbiology

scientific article

Divergence and convergence in enzyme evolution

scientific article

Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.

scientific article

Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution

scientific article published on 30 April 2010

The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation

scientific article

Beyond complete genomes: from sequence to structure and function

scientific article

Diversity of Cyclic Di-GMP-Binding Proteins and Mechanisms

scientific article

Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy

scientific article

Purification, cloning, and expression of an apyrase from the bed bug Cimex lectularius. A new type of nucleotide-binding enzyme

scientific article

Interplay of heritage and habitat in the distribution of bacterial signal transduction systems

scientific article

Evolutionary primacy of sodium bioenergetics

scientific article published on April 2008

Searching for drug targets in microbial genomes

scientific article

Conserved core structure and active site residues in alkaline phosphatase superfamily enzymes

scientific article

Co-evolution of primordial membranes and membrane proteins

scientific article published on 18 March 2009

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

scientific article

Acetyl-CoA synthetase from the amitochondriate eukaryote Giardia lamblia belongs to the newly recognized superfamily of acyl-CoA synthetases (Nucleoside diphosphate-forming).

scientific article published on February 2000

Structural Insight into the Mechanism of c-di-GMP Hydrolysis by EAL Domain Phosphodiesterases

scientific article

The past and present of sodium energetics: may the sodium-motive force be with you

scientific article published on 27 April 2008

The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution

scientific article published in October 2004

List of works by Michael Y. Galperin

Cyclic di-GMP: the first 25 years of a universal bacterial second messenger

Expanded microbial genome coverage and improved protein family annotation in the COG database

C-di-GMP: the dawning of a novel bacterial signalling system

PilZ domain is part of the bacterial c-di-GMP binding protein

Structural classification of bacterial response regulators: diversity of output domains and domain combinations

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts

'Conserved hypothetical' proteins: prioritization of targets for experimental study

Bacterial signal transduction network in a genomic perspective

Who's your neighbor? New computational approaches for functional genomics

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia

Diversity of structure and function of response regulator output domains

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

The cyanobacterial genome core and the origin of photosynthesis

The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold

Origin of first cells at terrestrial, anoxic geothermal fields

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

House cleaning, a part of good housekeeping

Analogous Enzymes: Independent Inventions in Enzyme Evolution

Sodium ion cycle in bacterial pathogens: evidence from cross-genome comparisons

Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia

Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases

From complete genome sequence to 'complete' understanding?

Bacterial cellulose biosynthesis: diversity of operons, subunits, products, and functions

Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases

Inventing the dynamo machine: the evolution of the F-type and V-type ATPases

A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family

Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea

Prokaryotic genomes: the emerging paradigm of genome-based microbiology

Divergence and convergence in enzyme evolution

Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.

Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution

The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation

Beyond complete genomes: from sequence to structure and function

Diversity of Cyclic Di-GMP-Binding Proteins and Mechanisms

Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy

Purification, cloning, and expression of an apyrase from the bed bug Cimex lectularius. A new type of nucleotide-binding enzyme

Interplay of heritage and habitat in the distribution of bacterial signal transduction systems

Evolutionary primacy of sodium bioenergetics

Searching for drug targets in microbial genomes

Conserved core structure and active site residues in alkaline phosphatase superfamily enzymes

Co-evolution of primordial membranes and membrane proteins

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

Acetyl-CoA synthetase from the amitochondriate eukaryote Giardia lamblia belongs to the newly recognized superfamily of acyl-CoA synthetases (Nucleoside diphosphate-forming).

Structural Insight into the Mechanism of c-di-GMP Hydrolysis by EAL Domain Phosphodiesterases

The past and present of sodium energetics: may the sodium-motive force be with you

The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution