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List of works by Jia-Ming Chang

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

scientific article

Alignathon: a competitive assessment of whole-genome alignment methods

scientific article

Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations

scientific article

Expression Divergence of Chemosensory Genes between Drosophila sechellia and Its Sibling Species and Its Implications for Host Shift

scientific article published on October 2015

GODoc: high-throughput protein function prediction using novel k-nearest-neighbor and voting algorithms

scientific article published on 18 November 2020

Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words

scientific article

Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability

scientific article published on 06 February 2019

MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

scientific article published on 24 December 2019

Multiple sequence alignment modeling: methods and applications

scientific article

PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases

scientific article published on 22 April 2016

Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions.

scientific article published on 24 November 2017

TADs are 3D structural units of higher-order chromosome organization in Drosophila.

scientific article published on 28 February 2018

TCS: a new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree reconstruction

scientific article (publication date: June 2014)

TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction

scientific article

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