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List of works by Scott A. Gerber

A HAD family phosphatase CSP-6 regulates the circadian output pathway in Neurospora crassa

scientific article

A Proteomic Strategy for Gaining Insights into Protein Sumoylation in Yeast

scientific article published on 12 November 2004

A bifurcated signaling cascade of NIMA-related kinases controls distinct kinesins in anaphase

scientific article

A novel role for RIP1 kinase in mediating TNFα production

scientific article

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

scientific article

Absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides

scientific article published on 27 January 2011

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

scientific article

Akt Regulates TNFα synthesis downstream of RIP1 kinase activation during necroptosis

scientific article

Budding yeast silencing complexes and regulation of Sir2 activity by protein-protein interactions.

scientific article

CDK12 loss in cancer cells affects DNA damage response genes through premature cleavage and polyadenylation

article

Characterization of mouse spleen cells by subtractive proteomics

scientific article published on 21 July 2005

Design and synthesis of substrate and internal standard conjugates for profiling enzyme activity in the Sanfilippo syndrome by affinity chromatography/electrospray ionization mass spectrometry

scientific article published in July 2001

Direct Profiling of Multiple Enzymes in Human Cell Lysates by Affinity Chromatography/electrospray Ionization Mass Spectrometry: Application to Clinical Enzymology ⬇️

doctoral dissertation by Scott Anthony Gerber, Chemistry, University of Washington, 2001

Direct profiling of multiple enzyme activities in human cell lysates by affinity chromatography/electrospray ionization mass spectrometry: application to clinical enzymology

scientific article

Direct regulation of Chk1 protein stability by E3 ubiquitin ligase HUWE1

scientific article published on 11 November 2019

Dual inhibition of sister chromatid separation at metaphase

scientific article

Dueling kinases regulate cell size at division through the SAD kinase Cdr2

scientific article

Enhanced analysis of metastatic prostate cancer using stable isotopes and high mass accuracy instrumentation

scientific article published in May 2006

Global assessment of its network dynamics reveals that the kinase Plk1 inhibits the phosphatase PP6 to promote Aurora A activity.

scientific article

HP1 proteins form distinct complexes and mediate heterochromatic gene silencing by nonoverlapping mechanisms

scientific article published on December 2008

INF2 is an endoplasmic reticulum-associated formin protein.

scientific article

Identification of RIP1 kinase as a specific cellular target of necrostatins

scientific article (publication date: May 2008)

Increasing phosphoproteomic coverage through sequential digestion by complementary proteases.

scientific article published on 15 October 2011

Insulin stimulates the phosphorylation of the exocyst protein Sec8 in adipocytes

scientific article

Insulin-stimulated GLUT4 Protein Translocation in Adipocytes Requires the Rab10 Guanine Nucleotide Exchange Factor Dennd4C ⬇️

scientific article published on March 22, 2011

Kinetic, mechanistic, and structural modeling studies of truncated wild-type leucine-rich repeat kinase 2 and the G2019S mutant

scientific article published on 7 October 2011

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae

scientific article published in March 2007

Large-scale phosphorylation analysis of mouse liver

scholarly article

MMFPh: a maximal motif finder for phosphoproteomics datasets

scientific article

MacroSEQUEST: efficient candidate-centric searching and high-resolution correlation analysis for large-scale proteomics data sets

scientific article

Multisite phosphorylation of the guanine nucleotide exchange factor Cdc24 during yeast cell polarization

scientific article

Myc protein is stabilized by suppression of a novel E3 ligase complex in cancer cells

scientific article

Neurospora WC-1 recruits SWI/SNF to remodel frequency and initiate a circadian cycle

scientific article

Offline pentafluorophenyl (PFP)-RP prefractionation as an alternative to high-pH RP for comprehensive LC-MS/MS proteomics and phosphoproteomics

scientific article published on 29 May 2017

Optimization and use of peptide mass measurement accuracy in shotgun proteomics

scientific article published on 23 April 2006

Plk1 regulates the kinesin-13 protein Kif2b to promote faithful chromosome segregation.

scientific article

Proteomic analysis shows synthetic oleanane triterpenoid binds to mTOR

scientific article

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

scientific article (publication date: October 1999)

Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors

scientific article published on 02 August 2013

Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells

scientific article published on 28 June 2011

Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1

scientific article published on 26 February 2015

Quantitative phosphorylation profiling of the ERK/p90 ribosomal S6 kinase-signaling cassette and its targets, the tuberous sclerosis tumor suppressors.

scientific article

Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock

scientific article

RNAi-mediated targeting of heterochromatin by the RITS complex

scientific article

Rapid and reproducible single-stage phosphopeptide enrichment of complex peptide mixtures: application to general and phosphotyrosine-specific phosphoproteomics experiments

scientific article published on 20 September 2011

Rapid determination of multiple linear kinase substrate motifs by mass spectrometry

scientific article

SILAC surrogates: rescue of quantitative information for orphan analytes in spike-in SILAC experiments

scientific article

SPECHT - single-stage phosphopeptide enrichment and stable-isotope chemical tagging: quantitative phosphoproteomics of insulin action in muscle

scientific article

Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation

scientific article published on June 2002

Structures of Down Syndrome Kinases, DYRKs, Reveal Mechanisms of Kinase Activation and Substrate Recognition

scientific article

Studies on the mechanism of RNAi-dependent heterochromatin assembly

scientific article published on January 2006

Tempest: Accelerated MS/MS Database Search Software for Heterogeneous Computing Platforms

scientific article published on 7 September 2016

Tempest: GPU-CPU computing for high-throughput database spectral matching

scientific article

The Tlo proteins are stoichiometric components of Candida albicans mediator anchored via the Med3 subunit

scientific article

The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications

scientific article

The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses

scientific article published on 18 September 2008

The iron deficiency response in Arabidopsis thaliana requires the phosphorylated transcription factor URI

scientific article published on 27 November 2019

Thioredoxin reductase is inhibited by the carbamoylating activity of the anticancer sulfonylhydrazine drug laromustine.

scientific article

Tobramycin reduces key virulence determinants in the proteome of Pseudomonas aeruginosa outer membrane vesicles

scientific article published in PLoS ONE

Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

scientific article

WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication

scientific article published on 01 January 2020

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