List of works - Alan Ruttenberg

A Semantic Web for Neuroscience? What could that mean?

scholarly article by Alan Ruttenberg published 9 May 2019 in Frontiers in Neuroinformatics

A domain ontology for the Non-Coding RNA field

A semantic approach for knowledge capture of MIcroRNA-Target gene interactions

article

A strategy for building neuroanatomy ontologies

scientific article published on 07 March 2012

Advancing translational research with the Semantic Web

scientific article (publication date: 9 May 2007)

An ontology-based method for secondary use of electronic dental record data

scientific article

Computational knowledge integration in biopharmaceutical research

scientific article published on September 2003

Computing Fast Fourier Transforms On Boolean Cubes And Related Networks

Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data

article

Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework

scientific article published on 18 June 2015

Detection of activity centers in cellular pathways using transcript profiling

scientific article published in August 2004

Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem

scientific article published on 18 December 2016

Edge-count probabilities for the identification of local protein communities and their organization

scholarly article by Victor Farutin published in December 2005

Finding our way through phenotypes

scientific article

Guidelines for writing definitions in ontologies ⬇️

journal article from 'Ciência da Informação' published in 2017

How I handled ambiguity in a system to read music scores

scholarly article published 1 November 1992

Life sciences on the Semantic Web: the Neurocommons and beyond

scientific article published on 12 March 2009

MIREOT: the Minimum Information to Reference an External Ontology Term

MORE ABOUT ONTOLOGY: Authors’ response

Meeting Report: BioSharing at ISMB 2010

scientific article (publication date: 4 December 2010)

Modeling biomedical experimental processes with OBI

scientific article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data

scientific article

OntoFox: web-based support for ontology reuse

scientific article

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration

scientific article (publication date: 12 October 2016)

Ontology and the future of dental research informatics

scientific article published on October 2010

Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

scientific article

Protein Ontology: a controlled structured network of protein entities

scientific article

Report on semantic web for health care and life sciences workshop

Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience

scientific article

Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology

scientific article published on 20 August 2020

Taking shortcuts with OWL using safe macros

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

scientific article

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology

scientific article

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

scientific article published in November 2007

The Ontology for Biomedical Investigations

scientific article

The SWAN biomedical discourse ontology

scientific article

The development of non-coding RNA ontology

scientific article published on January 2016

The logic of surveillance guidelines: an analysis of vaccine adverse event reports from an ontological perspective

scientific article

The neurological disease ontology

scientific article

The representation of protein complexes in the Protein Ontology (PRO).

scientific article

List of works by Alan Ruttenberg

A Semantic Web for Neuroscience? What could that mean?

A domain ontology for the Non-Coding RNA field

A semantic approach for knowledge capture of MIcroRNA-Target gene interactions

A strategy for building neuroanatomy ontologies

Advancing translational research with the Semantic Web

An ontology-based method for secondary use of electronic dental record data

Computational knowledge integration in biopharmaceutical research

Computing Fast Fourier Transforms On Boolean Cubes And Related Networks

Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data

Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework

Detection of activity centers in cellular pathways using transcript profiling

Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem

Edge-count probabilities for the identification of local protein communities and their organization

Finding our way through phenotypes

Guidelines for writing definitions in ontologies ⬇️

How I handled ambiguity in a system to read music scores

Life sciences on the Semantic Web: the Neurocommons and beyond

MIREOT: the Minimum Information to Reference an External Ontology Term

MIREOT: the Minimum Information to Reference an External Ontology Term

MORE ABOUT ONTOLOGY: Authors’ response

Meeting Report: BioSharing at ISMB 2010

Modeling biomedical experimental processes with OBI

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data

OntoFox: web-based support for ontology reuse

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration

Ontology and the future of dental research informatics

Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates

Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

Protein Ontology: a controlled structured network of protein entities

Report on semantic web for health care and life sciences workshop

Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience

Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology

Taking shortcuts with OWL using safe macros

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

The Ontology for Biomedical Investigations

The SWAN biomedical discourse ontology

The development of non-coding RNA ontology

The logic of surveillance guidelines: an analysis of vaccine adverse event reports from an ontological perspective

The neurological disease ontology

The representation of protein complexes in the Protein Ontology (PRO).

Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework.

VO: Vaccine Ontology

VO: Vaccine Ontology

VO: Vaccine Ontology

VO: Vaccine Ontology

flowCL: ontology-based cell population labelling in flow cytometry