Search filters

List of works by Edward Buckler

A Hierarchical View of Genetic Structure in the Rare Annual Plant Clarkia springvillensis

article

A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants.

scientific article

A SUPER powerful method for genome wide association study

scientific article

A first-generation haplotype map of maize

scientific article

A foundation for provitamin A biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels

scientific article

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

scientific article (publication date: 2011)

A modern ampelography: a genetic basis for leaf shape and venation patterning in grape

scientific article (publication date: 2014)

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

scientific article (publication date: 4 May 2011)

A single domestication for maize shown by multilocus microsatellite genotyping

scientific article

A sorghum practical haplotype graph facilitates genome-wide imputation and cost-effective genomic prediction

scientific article published on 25 March 2020

A study of allelic diversity underlying flowering-time adaptation in maize landraces

scientific article published on 6 February 2017

A unified mixed-model method for association mapping that accounts for multiple levels of relatedness

scientific article published on February 2006

Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches

scientific article

Accumulation of 5-hydroxynorvaline in maize (Zea mays) leaves is induced by insect feeding and abiotic stress

scientific article

Agriculture. Increased food and ecosystem security via perennial grains

scientific article

Agriculture: Feeding the future

scientific article

Aluminum tolerance in maize is associated with higher MATE1 gene copy number

scientific article published on 11 March 2013

An Arabidopsis haplotype map takes root

scientific article published on 01 September 2007

Architecture of floral branch systems in maize and related grasses

scientific article

Association analysis of candidate genes for maysin and chlorogenic acid accumulation in maize silks

scientific article published on 2 April 2005

Association and linkage analysis of aluminum tolerance genes in maize

scientific article

Association mapping across numerous traits reveals patterns of functional variation in maize

scientific article

Association mapping: critical considerations shift from genotyping to experimental design

scientific article published on 04 August 2009

Author Correction: Widespread long-range cis-regulatory elements in the maize genome

scientific article published on 01 March 2020

Biosynthesis of 8-O-Methylated Benzoxazinoid Defense Compounds in Maize.

scientific article published on 17 June 2016

Breaking the curse of dimensionality to identify causal variants in Breeding 4.

scientific article published on 13 December 2018

Can genomics boost productivity of orphan crops?

scientific article published on December 2012

Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation

scientific article published on 17 April 2017

Characterization of Biosynthetic Pathways for the Production of the Volatile Homoterpenes DMNT and TMTT in Zea mays

scientific article published on 23 September 2016

Comparative population genomics of maize domestication and improvement

scientific article published on 3 June 2012

Comparison of mixed-model approaches for association mapping

scientific article published on 3 February 2008

Comprehensive genotyping of the USA national maize inbred seed bank.

scientific article

Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

scientific article published on 21 September 2015

Correction: Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls

scientific article

Crop genomics: advances and applications ⬇️

scientific article published on December 29, 2011

Deleterious Mutation Burden and Its Association with Complex Traits in Sorghum (Sorghum bicolor)

scientific article published on 08 January 2019

Development of a maize molecular evolutionary genomic database

scientific article published on January 2003

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays

scientific article

Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits

scientific article

Dissection of maize kernel composition and starch production by candidate gene association

scientific article published on 17 September 2004

Distinct genetic architectures for male and female inflorescence traits of maize

scientific article

Diversity and heritability of the maize rhizosphere microbiome under field conditions

scientific article published on April 2013

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

scientific article published in November 2016

Dwarf8 polymorphisms associate with variation in flowering time

scientific article published in July 2001

Early allelic selection in maize as revealed by ancient DNA.

scientific article published in November 2003

Empirical comparison of Simple Sequence Repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness

scientific article

Enrichment of statistical power for genome-wide association studies

scientific article

Entering the second century of maize quantitative genetics ⬇️

scientific article published on March 6, 2013

Ethylene signaling regulates natural variation in the abundance of antifungal acetylated diferuloylsucroses and Fusarium graminearum resistance in maize seedling roots

scientific article published on 02 November 2018

Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence

scientific article published on 06 March 2019

Evolutionarily informed deep learning methods: Predicting transcript abundance from DNA sequence

scholarly article published 19 July 2018

Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits

scientific article published on 16 May 2018

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes

scientific article published on 30 July 2018

Fast-Flowering Mini-Maize: Seed to Seed in 60 Days.

scientific article published on 20 July 2016

Fine quantitative trait loci mapping of carbon and nitrogen metabolism enzyme activities and seedling biomass in the maize IBM mapping population

scientific article published on 22 October 2010

GAPIT: genome association and prediction integrated tool

scientific article published on 13 July 2012

GDPC: connecting researchers with multiple integrated data sources

scientific article

Genetic Analysis of Lodging in Diverse Maize Hybrids

Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity

scientific article

Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels

scientific article published on December 2011

Genetic association mapping and genome organization of maize

scientific article

Genetic association mapping identifies single nucleotide polymorphisms in genes that affect abscisic acid levels in maize floral tissues during drought

scientific article

Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers

scientific article

Genetic control of the leaf angle and leaf orientation value as revealed by ultra-high density maps in three connected maize populations

scientific article published on 25 March 2015

Genetic design and statistical power of nested association mapping in maize

scientific article

Genetic diversity and population structure of teosinte

scientific article

Genetic diversity and selection in the maize starch pathway

scientific article

Genetic diversity contribution to errors in short oligonucleotide microarray analysis

scientific article published in September 2006

Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity

scientific article published on 26 October 2020

Genetic properties of the maize nested association mapping population

scientific article

Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites

scientific article

Genetic structure and domestication history of the grape

scientific article

Genic and nongenic contributions to natural variation of quantitative traits in maize

scientific article

Genome-environment associations in sorghum landraces predict adaptive traits

scientific article

Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population

scientific article published on 27 April 2015

Genome-wide association studies of 14 agronomic traits in rice landraces.

scientific article published on 24 October 2010

Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain. ⬇️

scientific article published on 07 August 2013

Genome-wide association study based on multiple imputation with low-depth sequencing data: application to biofuel traits in reed canarygrass

scientific article

Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection.

scientific article

Genome-wide association study of leaf architecture in the maize nested association mapping population

article

Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population

scientific article published on 9 January 2011

Genome-wide imputation using the practical haplotype graph in the heterozygous crop cassava

scientific article published in 2021

Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize

scientific article

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America.

scientific article published in August 2017

Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize.

scientific article published on 30 October 2017

Genomic prediction in biparental tropical maize populations in water-stressed and well-watered environments using low-density and GBS SNPs

scientific article published on 19 November 2014

Genomic prediction in maize breeding populations with genotyping-by-sequencing

scientific article

Genomics assisted ancestry deconvolution in grape

scientific article published in 2013

Genotyping on High Throughput Sequencers: Preparation and Analysis of Reduced Representation Genomic Libraries

scientific article published in January 2012

Gramene: a bird's eye view of cereal genomes

scientific article

Gramene: a growing plant comparative genomics resource

scientific article

Haplotype associated RNA expression (HARE) improves prediction of complex traits in maize

scientific article published in 2021

Heterosis is prevalent for multiple traits in diverse maize germplasm

scientific article

High-resolution genetic mapping of maize pan-genome sequence anchors.

scientific article published on 16 April 2015

Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize.

scientific article published on 27 September 2017

Increased experimental conditions and marker densities identified more genetic loci associated with southern and northern leaf blight resistance in maize

scientific article published in Scientific Reports

Independent Molecular Basis of Convergent Highland Adaptation in Maize

scientific article

Insights into the effects of long-term artificial selection on seed size in maize

scientific article

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

scientific article published in February 2016

Joint QTL linkage mapping for multiple-cross mating design sharing one common parent

scientific article

Joint-linkage mapping and GWAS reveal extensive genetic loci that regulate male inflorescence size in maize

scientific article published on 23 January 2016

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

scientific article published on 25 June 2018

Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping

scientific article

Machine learning-enabled phenotyping for GWAS and TWAS of WUE traits in 869 field-grown sorghum accessions

scientific article published on 01 November 2021

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets

article

Maize HapMap2 identifies extant variation from a genome in flux.

scientific article

Maize YABBY Genes drooping leaf1 and drooping leaf2 Regulate Plant Architecture.

scientific article

Maize association population: a high-resolution platform for quantitative trait locus dissection

scientific article published on December 2005

Metabolome-Scale Genome-Wide Association Studies Reveal Chemical Diversity and Genetic Control of Maize Specialized Metabolites

scientific article published on 28 March 2019

Mixed linear model approach adapted for genome-wide association studies

scientific article

Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks

Molecular Diversity, Structure and Domestication of Grasses

scientific article published on 01 June 2001

Molecular Evolution of Type 1 Serine/Threonine Protein Phosphatases

article

Molecular and functional diversity of maize

scientific article

Multiple genes recruited from hormone pathways partition maize diterpenoid defences

scientific article published on 16 September 2019

Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification

scientific article

Natural variation for carotenoids in fresh kernels is controlled by uncommon variants in sweet corn

scientific article published on 01 March 2020

Natural variation in maize aphid resistance is associated with 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one glucoside methyltransferase activity

scientific article published on 28 June 2013

Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2.

scientific article

Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum

scientific article published on 06 February 2020

Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain.

scientific article

Open chromatin reveals the functional maize genome

scientific article published on 16 May 2016

PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants ⬇️

scientific article

Panzea: a database and resource for molecular and functional diversity in the maize genome

scientific article

Panzea: an update on new content and features

scientific article

Patterns of molecular evolution among paralogous floral homeotic genes

scientific article

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

scientific article

Plant molecular diversity and applications to genomics

scientific article

Population genetics of genomics-based crop improvement methods

scientific article published on 10 January 2011

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

scientific article

Power to detect higher-order epistatic interactions in a metabolic pathway using a new mapping strategy

scientific article published on 28 December 2006

Promoting preconception health in primary care

scientific article published in August 2015

Quantitative Genetic Analysis of the Maize Leaf Microbiome

RNA polymerase mapping in plants identifies enhancers enriched in causal variants

article

RNA polymerase mapping in plants identifies intergenic regulatory elements enriched in causal variants

scientific article published in 2021

Rapid genomic characterization of the genus vitis

scientific article

Rare genetic variation at Zea mays crtRB1 increases beta-carotene in maize grain

scientific article published on 21 March 2010

Recombination in diverse maize is stable, predictable, and associated with genetic load

scientific article

Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors

scientific article published on 09 October 2020

SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.).

scientific article published on 25 September 2012

Software engineering the mixed model for genome-wide association studies on large samples

scientific article

Structure of linkage disequilibrium and phenotypic associations in the maize genome

scientific article

Structure of linkage disequilibrium in plants

scientific article published on January 2003

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

scientific article

TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline

scientific article

TASSEL: software for association mapping of complex traits in diverse samples

scientific article published on October 2007

Technical note: Use of marker-based relationships with multiple-trait derivative-free restricted maximal likelihood

scientific article published on 03 November 2006

Ten simple rules to ruin a collaborative environment

scientific article published on 14 April 2022

The Collaborative Cross, a community resource for the genetic analysis of complex traits

article

The effect of artificial selection on phenotypic plasticity in maize.

scientific article published on 7 November 2017

The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications

scientific article published on March 1997

The genetic architecture of complex traits in teosinte (Zea mays ssp. parviglumis): new evidence from association mapping

scientific article published on 14 September 2008

The genetic architecture of maize flowering time.

scientific article

The genetic architecture of maize height.

scientific article published on 10 February 2014

The genetic architecture of maize stalk strength

scientific article

The genetic architecture of teosinte catalyzed and constrained maize domestication

scientific article published on 06 March 2019

The maize W22 genome provides a foundation for functional genomics and transposon biology

scientific article published on 30 July 2018

The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population

scientific article published on 26 October 2011

Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10.

scholarly article

Using crossover breakpoints in recombinant inbred lines to identify quantitative trait loci controlling the global recombination frequency

scientific article

Using natural allelic diversity to evaluate gene function.

scientific article

Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls

scientific article

Widespread long-range cis-regulatory elements in the maize genome

scientific article published on 18 November 2019

Zea ribosomal repeat evolution and substitution patterns

scientific article published on April 1996

Zea systematics: ribosomal ITS evidence

scientific article

ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize

scientific article

k-mer grammar uncovers maize regulatory architecture

article published in 2017

Paulina is supported by:

About Paulina

Help