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List of works by Zhandong Liu

A Local Poisson Graphical Model for inferring networks from sequencing data

scientific article

A Role for Progesterone-Regulated sFRP4 Expression in Uterine Leiomyomas.

scientific article published on 14 June 2017

A drosophila genetic resource of mutants to study mechanisms underlying human genetic diseases

scientific journal article

A kinome-wide RNAi screen identifies ERK2 as a druggable regulator of Shank3 stability

scientific article published on 29 January 2019

ATXN1-CIC Complex Is the Primary Driver of Cerebellar Pathology in Spinocerebellar Ataxia Type 1 through a Gain-of-Function Mechanism.

scientific article published on 7 March 2018

An autism-linked missense mutation in SHANK3 reveals the modularity of Shank3 function

scientific article published on 04 January 2019

Antisense oligonucleotide therapy in a humanized mouse model of <i>MECP2</i> duplication syndrome

scientific article published on 01 March 2021

Apparent bias toward long gene misregulation in MeCP2 syndromes disappears after controlling for baseline variations

scientific article published in Nature Communications

Asbestos exposure, pleural mesothelioma, and serum osteopontin levels

scientific article published on 01 October 2005

Beta-binomial modeling of CRISPR pooled screen data identifies target genes with greater sensitivity and fewer false negatives

scientific article published on 23 April 2019

CRISPRcloud: A secure cloud-based pipeline for CRISPR pooled screen deconvolution

scientific article published on 24 May 2017

Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders

scientific article published on 18 June 2020

Combinatorial therapy discovery using mixed integer linear programming

scientific article

Comprehensive evaluation of RNA-seq quantification methods for linearity

scientific article

Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease

scientific article

Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing.

scientific article published on 13 September 2017

Detecting hidden batch factors through data-adaptive adjustment for biological effects

scientific article published on 01 April 2018

Digital sorting of complex tissues for cell type-specific gene expression profiles

scientific article

Disease-related gene module detection based on a multi-label propagation clustering algorithm.

scientific article

Expression and functional pathway analysis of nuclear receptor NR2F2 in ovarian cancer

scientific article published on 20 May 2013

Extensive cryptic splicing upon loss of RBM17 and TDP43 in neurodegeneration models

scientific article published on 7 October 2016

FOXG1 expression shows correlation with neuronal differentiation in cerebellar development, aggressive phenotype in medulloblastomas, and survival in a xenograft model of medulloblastoma.

scientific article published on 24 August 2015

Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity.

scientific article published on 23 March 2018

Gene expression deconvolution in linear space

scientific article published on 28 December 2011

Gene expression profiles predict survival and progression of pleural mesothelioma.

scientific article published in February 2004

Genome-wide distribution of linker histone H1.0 is independent of MeCP2

scientific article published on 25 May 2018

High-Throughput Functional Analysis Distinguishes Pathogenic, Nonpathogenic, and Compensatory Transcriptional Changes in Neurodegeneration

scientific article published on 20 June 2018

Human-specific regulation of MeCP2 levels in fetal brains by microRNA miR-483-5p

scientific article published on 21 February 2013

Loss of Capicua alters early T cell development and predisposes mice to T cell lymphoblastic leukemia/lymphoma

scientific article

Loss of MeCP2 in the rat models regression, impaired sociability and transcriptional deficits of Rett syndrome.

scientific article

MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome

scientific article published on 03 May 2017

Mechanisms of FUS1/TUSC2 deficiency in mesothelioma and its tumorigenic transcriptional effects.

scientific article published on 24 October 2009

Molecular pathway identification using biological network-regularized logistic models

scientific article

Molecular profiling predicts meningioma recurrence and reveals loss of DREAM complex repression in aggressive tumors

scientific article published on 07 October 2019

NLRP7 affects trophoblast lineage differentiation, binds to overexpressed YY1 and alters CpG methylation

scientific article published on 18 September 2013

Nuclear matrix association of the human beta-globin locus utilizing a novel approach to quantitative real-time PCR

scientific article published on June 2003

On the reproducibility of TCGA ovarian cancer microRNA profiles

scientific article

Otud7a Knockout Mice Recapitulate Many Neurological Features of 15q13.3 Microdeletion Syndrome

scientific article published in February 2018

POU6f1 Mediates Neuropeptide-Dependent Plasticity in the Adult Brain.

scientific article published on 5 January 2018

Post-transcriptional regulation of SHANK3 expression by microRNAs related to multiple neuropsychiatric disorders

scientific article

Region-specific denoising identifies spatial co-expression patterns and intra-tissue heterogeneity in spatially resolved transcriptomics data

scientific article published in 2022

Reversal of phenotypes in MECP2 duplication mice using genetic rescue or antisense oligonucleotides

scientific article

Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples

scientific article

Serine catabolism regulates mitochondrial redox control during hypoxia

scientific article

Singular value decomposition-based regression identifies activation of endogenous signaling pathways in vivo

scientific article published on 18 December 2008

Stress detection using deep neural networks

scientific article published on 30 December 2020

TCGA2STAT: simple TCGA data access for integrated statistical analysis in R.

scientific article published on 14 November 2015

Tau Activates Transposable Elements in Alzheimer's Disease

scientific article published on 01 June 2018

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools

scientific article published on 3 October 2017

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics

scientific article published on 3 October 2017

The Snf1-related kinase, Hunk, is essential for mammary tumor metastasis

scientific article published on 28 August 2009

Transcriptomic Analysis of Mouse Cochlear Supporting Cell Maturation Reveals Large-Scale Changes in Notch Responsiveness Prior to the Onset of Hearing.

scientific article

Unravelling spatial gene associations with SEAGAL: a Python package for spatial transcriptomics data analysis and visualization

scientific article published in 2023

XMRF: an R package to fit Markov Networks to high-throughput genetics data.

scientific article

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