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List of works by Rob Lavigne

A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions

scientific article published in 2021

A PKS/NRPS/FAS hybrid gene cluster from Serratia plymuthica RVH1 encoding the biosynthesis of three broad spectrum, zeamine-related antibiotics ⬇️

scientific article

A cocktail of in vitro efficient phages is not a guarantee for in vivo therapeutic results against avian colibacillosis

scientific article published on 4 November 2013

A conserved motif flags acyl carrier proteins for β-branching in polyketide synthesis

scientific article

A general approach for recombinant protein expression in E. coli.

scientific article

A multifaceted study of Pseudomonas aeruginosa shutdown by virulent podovirus LUZ19.

scientific article

A novel hydrolase identified by genomic-proteomic analysis of phenylurea herbicide mineralization by Variovorax sp. strain SRS16.

scientific article published on 14 October 2011

A procedure for systematic identification of bacteriophage-host interactions of P. aeruginosa phages

scientific article

A standardized approach for accurate quantification of murein hydrolase activity in high-throughput assays

scientific article published on 10 November 2006

A suggested classification for two groups of Campylobacter myoviruses

scientific article

A suggested new bacteriophage genus: "Viunalikevirus".

scientific article

A theoretical and experimental proteome map of Pseudomonas aeruginosa PAO1.

scientific article published on June 2012

A thermostable Salmonella phage endolysin, Lys68, with broad bactericidal properties against gram-negative pathogens in presence of weak acids

scientific article

Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee

scientific article published in 2023

Advanced engineering of third-generation lysins and formulation strategies for clinical applications

scientific article published on 04 September 2020

Analysis of outer membrane permeability of Pseudomonas aeruginosa and bactericidal activity of endolysins KZ144 and EL188 under high hydrostatic pressure

scientific article published on 29 January 2008

Antibacterial phage ORFans of Pseudomonas aeruginosa phage LUZ24 reveal a novel MvaT inhibiting protein.

scientific article

Art-175 is a highly efficient antibacterial against multidrug-resistant strains and persisters of Pseudomonas aeruginosa

scientific article

Bacteriophage Application for Difficult-to-treat Musculoskeletal Infections: Development of a Standardized Multidisciplinary Treatment Protocol

scientific article published on 23 September 2019

Bacteriophage Therapy: Advances in Formulation Strategies and Human Clinical Trials

scientific article published on November 2015

Bacteriophage-mediated interference of the c-di-GMP signalling pathway in Pseudomonas aeruginosa

scientific article published on 12 December 2020

Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, belonging to the "phiKMV-like viruses".

scientific article published on 18 March 2011

Bacteriophages of Pseudomonas

scientific article

Biochemical characterization of malate synthase G of P. aeruginosa.

scientific article published on 24 June 2009

Breaking barriers: expansion of the use of endolysins as novel antibacterials against Gram-negative bacteria

scientific article published on January 2015

CIM(®) monolithic anion-exchange chromatography as a useful alternative to CsCl gradient purification of bacteriophage particles

scientific article

Call for a dedicated European legal framework for bacteriophage therapy.

scientific article published on 06 February 2014

Capsule-Targeting Depolymerase, Derived from Klebsiella KP36 Phage, as a Tool for the Development of Anti-Virulent Strategy.

scientific article published on December 2016

Characterization of Novel Bacteriophages for Biocontrol of Bacterial Blight in Leek Caused by Pseudomonas syringae pv. porri.

scientific article published on 15 March 2016

Characterization of five novel endolysins from Gram-negative infecting bacteriophages

scientific article published on 26 July 2012

Characterization of modular bacteriophage endolysins from Myoviridae phages OBP, 201φ2-1 and PVP-SE1

scientific article

Characterization of newly isolated lytic bacteriophages active against Acinetobacter baumannii

scientific article

Characterization of the Newly Isolated Lytic Bacteriophages KTN6 and KT28 and Their Efficacy against Pseudomonas aeruginosa Biofilm

scientific article published on 21 May 2015

Characterization of the bacteriophage PhiKMV DNA ligase

scientific article published in October 2005

Characterization of two β-xylosidases from Bifidobacterium adolescentis and their contribution to the hydrolysis of prebiotic xylooligosaccharides

scientific article published on 21 June 2011

Classification of Myoviridae bacteriophages using protein sequence similarity

scientific article

Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain

scientific article published on 01 January 2019

Comparative Analysis of 37 Acinetobacter Bacteriophages.

scientific article published on 24 December 2017

Comparative analysis of the widespread and conserved PB1-like viruses infecting Pseudomonas aeruginosa

scientific article published on 12 August 2009

Comparative transcriptomics analyses reveal the conservation of an ancestral infectious strategy in two bacteriophage genera.

scientific article published on 12 May 2017

Comparison of new giant bacteriophages OBP and Lu11 of soil pseudomonads with bacteriophages of phiKZ-supergroup of Pseudomonas aeruginosa

scientific article published in August 2006

Complete genome sequence of the giant Pseudomonas phage Lu11.

scientific article published on June 2012

Complete genome sequence of the giant virus OBP and comparative genome analysis of the diverse ΦKZ-related phages

scientific article published on 30 November 2011

Complete genome sequence of the novel Escherichia coli phage phAPEC8.

scientific article published on December 2012

Correction: Characterization of the Newly Isolated Lytic Bacteriophages KTN6 and KT28 and Their Efficacy against Pseudomonas aeruginosa Biofilm

scientific article published on 25 August 2015

Development of giant bacteriophage ϕKZ is independent of the host transcription apparatus

scientific article

Differential transcription profiling of the phage LUZ19 infection process in different growth media

scientific article published on 15 January 2021

Direct iterative protein profiling (DIPP) - an innovative method for large-scale protein detection applied to budding yeast mitosis.

scientific article

Discovery of an acyclic nucleoside phosphonate that inhibits Mycobacterium tuberculosis ThyX based on the binding mode of a 5-alkynyl substrate analogue

scientific article

Effect of breast volume on treatment reproducibility on a tomotherapy unit in the treatment of breast cancer

scientific article

Efficacy of Artilysin Art-175 against Resistant and Persistent Acinetobacter baumannii.

scientific article

Elucidation of the relative and absolute stereochemistry of the kalimantacin/batumin antibiotics

scientific article published on 11 July 2017

Engineered endolysin-based "Artilysins" to combat multidrug-resistant gram-negative pathogens

scientific article (publication date: July 2014)

Evaluation of the antibacterial and antibiofilm activities of novel CRAMP-vancomycin conjugates with diverse linkers.

scientific article

Experimental evidence for proteins constituting virion components and particle morphogenesis of bacteriophage ZF40.

scientific article

Experimental phage therapy of burn wound infection: difficult first steps

scientific article

Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria

scientific article published on 20 October 2020

Exposure to solute stress affects genome-wide expression but not the polycyclic aromatic hydrocarbon-degrading activity of Sphingomonas sp. strain LH128 in biofilms

scientific article published on 21 September 2012

Expression of a novel P22 ORFan gene reveals the phage carrier state in Salmonella typhimurium.

scientific article

FLAMS: Find Lysine Acylations and other Modification Sites

scientific article published in 2024

Feasibility of spray drying bacteriophages into respirable powders to combat pulmonary bacterial infections

scientific article

First Report of Filamentous Phages Isolated from Tunisian Orchards to Control Erwinia amylovora

scientific article published on 10 November 2020

Food applications of bacterial cell wall hydrolases

scientific article

Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells

scientific article published on 10 September 2014

From endolysins to Artilysin®s: novel enzyme-based approaches to kill drug-resistant bacteria

scientific article published on February 2016

Functional Analysis and Antivirulence Properties of a New Depolymerase from a Myovirus That Infects Acinetobacter baumannii Capsule K45

scientific article published on 05 February 2019

Functional elucidation of antibacterial phage ORFans targeting Pseudomonas aeruginosa

scientific article published on 26 August 2014

Functional genomic analysis of two Staphylococcus aureus phages isolated from the dairy environment

scientific article published on 16 October 2009

Genome Sequence of Serratia plymuthica RVH1, Isolated from a Raw Vegetable-Processing Line

scientific article published on 06 February 2014

Genome and proteome analysis of 7-7-1, a flagellotropic phage infecting Agrobacterium sp H13-3.

scientific article published on 31 May 2012

Genome comparison of Pseudomonas aeruginosa large phages

scientific article

Genomes of "phiKMV-like viruses" of Pseudomonas aeruginosa contain localized single-strand interruptions.

scientific article published on 9 July 2009

Genomic analysis of Pseudomonas aeruginosa phages LKD16 and LKA1: establishment of the phiKMV subgroup within the T7 supergroup

scientific article

Genomic and proteomic characterization of the broad-host-range Salmonella phage PVP-SE1: creation of a new phage genus

scientific article

Genomic, transcriptomic, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages

Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity

scientific article published in 2021

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

scientific article published on 08 July 2019

High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection

scientific article

High prevalence of IncP-1 plasmids and IS1071 insertion sequences in on-farm biopurification systems and other pesticide-polluted environments

scientific article published on 24 July 2013

Homotypic interactions among bacteriophage phiKMV early proteins

scientific article published on 29 May 2007

Host RNA polymerase inhibitors encoded by ϕKMV-like phages of Pseudomonas

scientific article published on 3 November 2012

Hurdles in bacteriophage therapy: deconstructing the parameters.

scientific article

Identification and characterization of a highly thermostable bacteriophage lysozyme

scientific article published on 01 November 2004

Identification and comparative analysis of the structural proteomes of phiKZ and EL, two giant Pseudomonas aeruginosa bacteriophages

scientific article

Identification of EPS-degrading activity within the tail spikes of the novel Pseudomonas putida phage AF.

scientific article published on 16 October 2012

Identification of opsA, a gene involved in solute stress mitigation and survival in soil, in the polycyclic aromatic hydrocarbon-degrading bacterium Novosphingobium sp. strain LH128.

scientific article published on 21 March 2014

Identification of protein-protein interactions by standard gal4p-based yeast two-hybrid screening

scientific article published on January 2015

Impact of phage predation on <i>P. aeruginosa</i> adhered to human airway epithelium: major transcriptomic changes in metabolism and virulence-associated genes

scientific article published in 2023

In Vitro Persistence Level Reflects In Vivo Antibiotic Survival of Natural Pseudomonas aeruginosa Isolates in a Murine Lung Infection Model

scientific article published on 15 June 2023

In silico Characterization of DNA Motifs with Particular Reference to Promoters and Terminators

scientific article published on 01 January 2009

Instability of bacteriophages in spray-dried trehalose powders is caused by crystallization of the matrix.

scientific article published on 17 June 2014

Integration of genomic and proteomic analyses in the classification of the Siphoviridae family.

scientific article published on 14 November 2014

Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

scientific article published on 10 March 2020

Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

scientific article published on 22 June 2019

Introducing differential RNA-seq mapping to track the early infection phase for Pseudomonas phage ɸKZ

scientific article published on 25 October 2020

Isolation and Characterization of Lytic Pseudomonas aeruginosa Bacteriophages Isolated from Sewage Samples from Tunisia

scientific article published in 2022

Isolation and purification of a new kalimantacin/batumin-related polyketide antibiotic and elucidation of its biosynthesis gene cluster

scientific article

Isolation of lytic Pseudomonas aeruginosa bacteriophages from worldwide collected water samples

scientific article published on 01 January 2006

Klebsiella phages representing a novel clade of viruses with an unknown DNA modification and biotechnologically interesting enzymes

scientific article published on 21 October 2016

Learning from bacteriophages - advantages and limitations of phage and phage-encoded protein applications

scientific article published on December 2012

Listeria phage A511, a model for the contractile tail machineries of SPO1-related bacteriophages

scientific article published on 28 February 2014

Lysin LysMK34 of Acinetobacter baumannii bacteriophage PMK34 has a turgor pressure-dependent intrinsic antibacterial activity and reverts colistin resistance

scientific article published on 24 July 2020

Massive activation of archaeal defense genes during viral infection

scientific article published on 22 May 2013

Matrix-assisted laser desorption/ionization imaging mass spectrometry: a promising technique for reproductive research

scientific article

Meeting report of the European Molecular Biology Organization (EMBO) Symposium 'Viruses of Microbes II', Brussels, July 2012.

scientific article published on 7 December 2012

Metabolite profiling and peptidoglycan analysis of transient cell wall-deficient bacteria in a new Escherichia coli model system.

scientific article

Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland.

scientific article

Microbiological and molecular assessment of bacteriophage ISP for the control of Staphylococcus aureus

scientific article

Minimum Information about a Biosynthetic Gene cluster.

scientific article published on August 2015

Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis

scientific article published on 12 November 2015

Molecular and physiological analysis of three Pseudomonas aeruginosa phages belonging to the "N4-like viruses".

scientific article

Muralytic activity and modular structure of the endolysins of Pseudomonas aeruginosa bacteriophages phiKZ and EL.

scientific article

New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae

scientific article published on 03 May 2019

Next-Generation "-omics" Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa

scientific article

Novel N4-Like Bacteriophages of Pectobacterium atrosepticum.

scientific article

Optimizing the European regulatory framework for sustainable bacteriophage therapy in human medicine

scientific article published on 17 April 2012

P22 mediated recombination of frt-sites.

scientific article published on 12 July 2014

PHIRE, a deterministic approach to reveal regulatory elements in bacteriophage genomes

scientific article published on 22 January 2004

Paving a regulatory pathway for phage therapy. Europe should muster the resources to financially, technically and legally support the introduction of phage therapy.

scientific article published on 18 October 2013

Peptidomic analysis of human reflex tear fluid.

scientific article

Phage Proteomics: Applications of Mass Spectrometry

scientific article published on 01 January 2009

Phage Therapy ⬇️

scholarly article

Phage proteins target and co-opt host ribosomes immediately upon infection

scientific article published in 2024

Phage vB_PatP_CB5: A Member of the Proposed Genus ''

scholarly article by Colin Buttimer published in July 2018

Phage-host interactions during pseudolysogeny: Lessons from the Pid/dgo interaction.

scientific article published on January 2013

Phenotypic and genotypic variations within a single bacteriophage species.

scientific article

Phenotypic characterization of an international Pseudomonas aeruginosa reference panel: strains of cystic fibrosis (CF) origin show less in vivo virulence than non-CF strains.

scientific article

Position paper: the creation of a rational scheme for the nomenclature of viruses of Bacteria and Archaea

scientific article published on 10 June 2009

Predicting in vivo efficacy of therapeutic bacteriophages used to treat pulmonary infections

scientific article published on 16 September 2013

Prevalence of Pf1-like (pro)phage genetic elements among Pseudomonas aeruginosa isolates.

scientific article published on 15 May 2015

Professor Dr. Richard Bruynoghe: A 1951 overview of his bacteriophage research spanning three decades

scientific article published on January 2012

Protection of Phage Applications in Crop Production: A Patent Landscape

scientific article published on 19 March 2019

Protein-protein interaction analyses in the search for new antibacterial targets.

scientific article published in January 2012

Quality and safety requirements for sustainable phage therapy products

scientific article published on 14 January 2015

Quality control and statistical evaluation of combinatorial DNA libraries using nanopore sequencing

scientific article published on 01 October 2020

Quality-controlled small-scale production of a well-defined bacteriophage cocktail for use in human clinical trials

scientific article

RNA-Sequencing Reveals the Progression of Phage-Host Interactions between φR1-37 and Yersinia enterocolitica.

scientific article published on 22 April 2016

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).

scientific article

Reliable Identification of Environmental Pseudomonas Isolates Using the rpoD Gene

scientific article published on 31 July 2020

Representational Difference Analysis (RDA) of bacteriophage genomes.

scientific article

Role of the Pre-neck Appendage Protein (Dpo7) from Phage vB_SepiS-phiIPLA7 as an Anti-biofilm Agent in Staphylococcal Species

scientific article

Romulus and Remus, two phage isolates representing a distinct clade within the Twortlikevirus genus, display suitable properties for phage therapy applications

scientific article

SAPPHIRE: a neural network based classifier for σ70 promoter prediction in Pseudomonas

scientific article published on 22 September 2020

STORM towards protein function: systematic tailored ORF-data retrieval and management.

scientific article

Selection and characterization of a candidate therapeutic bacteriophage that lyses the Escherichia coli O104:H4 strain from the 2011 outbreak in Germany

scientific article

Selection of Potential Therapeutic Bacteriophages that Lyse a CTX-M-15 Extended Spectrum β-Lactamase Producing Salmonella enterica Serovar Typhi Strain from the Democratic Republic of the Congo

scientific article

Stability analysis of the bacteriophage ϕKMV lysin gp36C and its putative role during infection

article

Stability of phiKMV lysin gp36c reflects its role during bacteriophage infection

scientific article published on 01 January 2007

Structural Analysis of Jumbo Coliphage phAPEC6

scientific article published on 28 April 2020

Structural analysis of bacteriophage-encoded peptidoglycan hydrolase domain KMV36C: crystallization and preliminary X-ray diffraction

scientific article

Structural and Enzymatic Characterization of ABgp46, a Novel Phage Endolysin with Broad Anti-Gram-Negative Bacterial Activity

scientific article

Structural elucidation of a novel mechanism for the bacteriophage-based inhibition of the RNA degradosome

scientific article published on 22 July 2016

Substrate specificity of three recombinant α-L-arabinofuranosidases from Bifidobacterium adolescentis and their divergent action on arabinoxylan and arabinoxylan oligosaccharides.

scientific article published on 29 October 2010

Supersize me: Cronobacter sakazakii phage GAP32.

scientific article published on 2 June 2014

Survey of Pseudomonas aeruginosa and its phages: de novo peptide sequencing as a novel tool to assess the diversity of worldwide collected viruses

scientific article

Systematic analysis of the kalimantacin assembly line NRPS module using an adapted targeted mutagenesis approach.

scientific article published on 15 December 2015

Systematic identification of hypothetical bacteriophage proteins targeting key protein complexes of Pseudomonas aeruginosa.

scientific article published on 15 September 2014

T4-related bacteriophage LIMEstone isolates for the control of soft rot on potato caused by 'Dickeya solani'

scientific article

Tailspike with EPS-depolymerase activity, encoded by a phage belonging to a new genus, makes Providencia stuartii susceptible to serum-mediated killing

scientific article published on 01 May 2020

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee

scientific article

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

scientific article published on 22 January 2018

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

scientific article published on 11 March 2020

Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee

scientific article

The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida Group

scientific article published in 2021

The O-specific polysaccharide lyase from the phage LKA1 tailspike reduces Pseudomonas virulence

scientific article published on 24 November 2017

The Phage Therapy Paradigm: Prêt-à-Porter or Sur-mesure?

scientific article published on 10 November 2010

The SPO1-related bacteriophages

scientific article published on 17 August 2010

The T7-related Pseudomonas putida phage φ15 displays virion-associated biofilm degradation properties

scientific article

The adsorption of Pseudomonas aeruginosa bacteriophage phiKMV is dependent on expression regulation of type IV pili genes.

scientific article

The genome and structural proteome of YuA, a new Pseudomonas aeruginosa phage resembling M6.

scientific article published on 7 December 2007

The genome of bacteriophage phiKMV, a T7-like virus infecting Pseudomonas aeruginosa

scientific article

The global spread of lytic phage groups infecting Pseudomonas aeruginosa

scientific article published on 01 January 2009

The high-affinity peptidoglycan binding domain of Pseudomonas phage endolysin KZ144.

scientific article

The intron-containing genome of the lytic Pseudomonas phage LUZ24 resembles the temperate phage PaP3.

scientific article

The kalimantacin/batumin biosynthesis operon encodes a self-resistance isoform of the FabI bacterial target

scientific article published on October 2010

The lysis cassette of bacteriophage ϕKMV encodes a signal-arrest-release endolysin and a pinholin

scientific article

The role of interactions between phage and bacterial proteins within the infected cell: a diverse and puzzling interactome

scientific article published on 18 August 2009

The structural peptidoglycan hydrolase gp181 of bacteriophage phiKZ.

scientific article published on 29 July 2008

The structural proteome of Pseudomonas aeruginosa bacteriophage phiKMV.

scientific article

The temperate Burkholderia phage AP3 of the Peduovirinae shows efficient antimicrobial activity against B. cenocepacia of the IIIA lineage.

scientific article

The zeamine antibiotics affect the integrity of bacterial membranes.

scientific article published in December 2014

Three proposed new bacteriophage genera of staphylococcal phages: "3alikevirus", "77likevirus" and "Phietalikevirus".

scientific article

Total synthesis of Septocylindrin B and C-terminus modified analogues

scientific article

Transcriptomic Analysis of the Campylobacter jejuni Response to T4-Like Phage NCTC 12673 Infection.

scientific article published on 16 June 2018

Transcriptomic analysis of phenanthrene degrading Sphingomonas biofilms exposed to environmentally relevant solute and matric stresses

scientific article published on 01 January 2011

Two Complete and One Draft Genome Sequence of Nonproteolytic Clostridium botulinum Type E Strains NCTC 8266, NCTC 8550, and NCTC 11219.

scientific article published on 12 March 2015

Two Phages, phiIPLA-RODI and phiIPLA-C1C, Lyse Mono- and Dual-Species Staphylococcal Biofilms.

scientific article published on 6 March 2015

Two-Dimensional Fluorescence Difference Gel Electrophoresis Analysis of Spermatogenesis in the Rat

article

Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools

scientific article

Use of bacteriophage endolysin EL188 and outer membrane permeabilizers against Pseudomonas aeruginosa

scientific article published on 17 January 2011

Viral Transmission Dynamics at Single-Cell Resolution Reveal Transiently Immune Subpopulations Caused by a Carrier State Association

scientific article

What the diagnostic radiologist needs to know about radiation oncology

scientific article published on October 2011

[Comparison of the genome for phylogenetically related bacteriophages phiKZ and EL of Pseudomonas aeruginosa: evolutionary aspects and minimal genome size]

scientific article published on 01 April 2005

[Genome instability of Pseudomonas aeruginosa phages of the EL species: examination of virulent mutants]

scientific article published on 01 February 2011

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