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List of works by Andrew J. Millar

A Bayesian approach for structure learning in oscillating regulatory networks.

scientific article

A multi-model framework for the Arabidopsis life cycle

scholarly article by Argyris Zardilis et al published 29 April 2019 in Journal of Experimental Botany

A novel circadian phenotype based on firefly luciferase expression in transgenic plants

scientific article published on September 1, 1992

A phospho-dawn of protein modification anticipates light onset in the picoeukaryote <i>Ostreococcus tauri</i>

scientific article published on 22 July 2023

A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis.

scientific article published on 9 September 2011

A suite of photoreceptors entrains the plant circadian clock

scientific article

A switchable light-input, light-output system modelled and constructed in yeast

scientific article

An Arabidopsis mutant hypersensitive to red and far-red light signals

scientific article

Analysis of Circadian Leaf Movement Rhythms in Arabidopsis thaliana

article

Arabidopsis thaliana circadian clock is regulated by the small GTPase LIP1.

scientific article published on 2 August 2007

Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock

scientific article

Better research by efficient sharing: evaluation of free management platforms for synthetic biology designs

scientific article published on 20 June 2019

Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes

scientific article

Circadian Clock Parameter Measurement: Characterization of Clock Transcription Factors Using Surface Plasmon Resonance ⬇️

scientific article published on April 1, 2011

Circadian Clock-Regulated Expression of Phytochrome and Cryptochrome Genes in Arabidopsis

scientific article published on 01 December 2001

Circadian Control of cab Gene Transcription and mRNA Accumulation in Arabidopsis

article

Circadian Genetics in the Model Higher Plant, Arabidopsis thaliana

article

Circadian biology: clocks for the real world

scientific article

Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees.

scientific article published on 8 March 2018

Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis

scientific article published on 01 January 1999

Circadian rhythms of ethylene emission in Arabidopsis.

scientific article published on 29 October 2004

Circadian rhythms persist without transcription in a eukaryote

scientific article

Circadian rhythms: PASsing time ⬇️

scientific article published on August 1, 1997

Clock proteins: turned over after hours?

scientific article

Clocks in algae

scientific article

Conditional Circadian Dysfunction of the Arabidopsis early-flowering 3 Mutant

scientific article published in Science

Conditional circadian regulation of PHYTOCHROME A gene expression.

scientific article published in December 2001

Consistent robustness analysis (CRA) identifies biologically relevant properties of regulatory network models

scientific article

Correction to: Period Estimation and Rhythm Detection in Timeseries Data Using BioDare2, the Free, Online, Community Resource

Corrigendum for the paper ‘Digital clocks: simple Boolean models can quantitatively describe circadian systems’.

scientific article published on 5 September 2012

Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform

scientific article

Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model

scientific article

Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure

scientific article

Design principles underlying circadian clocks

scientific article published on November 2004

Detection and resolution of genetic loci affecting circadian period in Brassica oleracea

scientific article published on 13 December 2006

Digital clocks: simple Boolean models can quantitatively describe circadian systems

scientific article published on 12 April 2012

Distinct regulation ofCABandPHYBgene expression by similar circadian clocks

scientific article published on 01 November 2002

ELF4 is required for oscillatory properties of the circadian clock

article published in 2007

Expanding the bioluminescent reporter toolkit for plant science with NanoLUC

scientific article published on 08 July 2019

Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana

scientific article

Extension of a genetic network model by iterative experimentation and mathematical analysis

scientific article

FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering

scientific article published on May 2012

FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock

scientific article published on 10 February 2006

FLOWERING LOCUS C-dependent and -independent regulation of the circadian clock by the autonomous and vernalization pathways

scientific article

Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE.

scientific article published on 20 January 2006

Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis

scientific article

Functional analysis of Casein Kinase 1 in a minimal circadian system

scientific article

Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga

scientific article

Functional characterization of phytochrome interacting factor 3 for the Arabidopsis thaliana circadian clockwork

scientific article published on 30 July 2005

Functional independence of circadian clocks that regulate plant gene expression.

scientific article published in August 2000

Genomic transformation of the picoeukaryote Ostreococcus tauri

scientific article

Guidelines for Genome-Scale Analysis of Biological Rhythms

scientific article published on November 2017

HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 is required for circadian periodicity through the promotion of nucleo-cytoplasmic mRNA export in Arabidopsis

scientific article published on 19 November 2013

How plants tell the time.

scientific article

Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics

scientific article

Independent Action of ELF3 and phyB to Control Hypocotyl Elongation and Flowering Time

scientific article published on 01 April 2000

Input signals to the plant circadian clock

scientific article published on January 2004

Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis

scientific article

Isoform switching facilitates period control in the Neurospora crassa circadian clock

scientific article published on 15 April 2008

Isoform switching facilitates period control in the Neurospora crassa circadian clock.

scientific article published on 12 February 2008

Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri

scientific article

Light and circadian regulation of clock components aids flexible responses to environmental signals

scientific article published on 20 May 2014

Light inputs shape the Arabidopsis circadian system

scientific article published on 4 March 2011

Light responses of a plastic plant

article

Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature

scientific article

Low-temperature-specific effects ofPHYTOCHROME Con the circadian clock in Arabidopsis suggest thatPHYCunderlies natural variation in biological timing

Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator

scientific article

Mechanistic model of temperature influence on flowering through whole-plant accumulation of FT

article

Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus

scientific article

Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock

scientific article published on October 2013

Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana.

scientific article

Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler

article

Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs

scientific article

Molecular basis of flowering under natural long-day conditions in Arabidopsis

scientific article published on 24 September 2018

Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves

scientific article published on 17 January 2019

Multiple light inputs to a simple clock circuit allow complex biological rhythms

scientific article

Multiscale digital Arabidopsis predicts individual organ and whole-organism growth

scientific article

Natural allelic variation identifies new genes in the Arabidopsis circadian system

article

Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock

scientific article published on 21 March 2005

Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures.

scientific article published on January 2013

New models in vogue for circadian clocks.

scientific article

Non-transcriptional oscillators in circadian timekeeping ⬇️

scientific article published on August 20, 2012

Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure.

scientific article

Organ specificity in the plant circadian system is explained by different light inputs to the shoot and root clocks

scientific article published on 31 May 2016

Partners in time: EARLY BIRD associates with ZEITLUPE and regulates the speed of the Arabidopsis clock

scientific article published in 2011

Peroxiredoxins are conserved markers of circadian rhythms

scientific article

Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis

scientific article

Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism.

scientific article published in March 2018

Phytochrome phototransduction pathways

scientific article published on January 1994

PlaSMo: Making existing plant and crop mathematical models available to plant systems biologists

article

Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage

scientific article

Plants in silico: why, why now and what?--an integrative platform for plant systems biology research

scientific article

Practical steps to digital organism models, from laboratory model species to ‘Crops in silico

scientific article published on 01 April 2019

Prediction of photoperiodic regulators from quantitative gene circuit models.

scientific article published in December 2009

Proteasome function is required for biological timing throughout the twenty-four hour cycle

scientific article

Protocol: Streamlined sub-protocols for floral-dip transformation and selection of transformants in Arabidopsis thaliana

scientific article

PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO

scientific article published on 18 May 2020

PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO

scientific article published on 26 August 2020

QTL for timing: a natural diversity of clock genes

article

Quantitative analysis of regulatory flexibility under changing environmental conditions

scientific article

Real-time imaging of transcription in living cells and tissues

scientific article published on 01 August 1996

Reconstruction of transcriptional dynamics from gene reporter data using differential equations

scientific article

Regulatory principles and experimental approaches to the circadian control of starch turnover

scientific article published on 11 December 2013

Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock.

scientific article

Robustness from flexibility in the fungal circadian clock

scientific article

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology

scientific article

Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana

scientific article published on 26 December 2014

Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri

scientific article published on 24 May 2011

Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf

scientific article

Stochastic properties of the plant circadian clock

scientific article published on 31 August 2011

Strengths and limitations of period estimation methods for circadian data.

scientific article

SynBio2Easy-a biologist-friendly tool for batch operations on SBOL designs with Excel inputs

publication published on 01 January 2021

TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock

scientific article published on 11 May 2007

Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis

scientific article published on 13 January 2011

The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana

scientific article published in 2022

The ELF3 zeitnehmer regulates light signalling to the circadian clock

scientific article published in Nature

The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana

scientific article published in Nature

The Intracellular Dynamics of Circadian Clocks Reach for the Light of Ecology and Evolution

scientific article

The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks

scientific article published on 10 October 2003

The circadian clock controls the expression pattern of the circadian input photoreceptor, phytochrome B.

scientific article published on December 1999

The circadian clock that controls gene expression in Arabidopsis is tissue specific

scientific article published in September 2002

The circadian clock. A plant's best friend in a spinning world

article

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

scientific article

The contributions of interlocking loops and extensive nonlinearity to the properties of circadian clock models

scientific article

The genetics of phototransduction and circadian rhythms in Arabidopsis

scientific article published on March 1997

The grant is dead, long live the data - migration as a pragmatic exit strategy for research data preservation

scientific article published on 23 September 2019

The molecular basis of temperature compensation in the Arabidopsis circadian clock

scientific article published on 14 April 2006

The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species

scientific article

The regulation of circadian period by phototransduction pathways in Arabidopsis.

scientific article

The wild-type circadian period of Neurospora is encoded in the residual network of the null frq mutants

scientific article

Time-resolved Interaction Proteomics of the Putative Scaffold Protein GIGANTEA in Arabidopsis thaliana

Time-resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis

scientific article published in 2019

Ubiquitin ligase switch in plant photomorphogenesis: A hypothesis

scientific article published on 18 November 2010

Uncovering the design principles of circadian clocks: mathematical analysis of flexibility and evolutionary goals.

scientific article published on 18 August 2005

Watching the hands of the Arabidopsis biological clock

scientific article

Weather and seasons together demand complex biological clocks

scientific article published on 08 October 2009

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