List of works - Gilles Vergnaud

A VNTR isolated by size selection of human DNA fragments detects RFLPs at the extremity of 1p and 4q.

scientific article published on August 1991

A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus.

scientific article published on 4 August 2017

A dominant modifier of transgene methylation is mapped by QTL analysis to mouse chromosome 13

scientific article

A genetic linkage map of the rat derived from recombinant inbred strains

scientific article published on 01 February 1996

A gradient of sex linkage in the pseudoautosomal region of the human sex chromosomes

scientific article published in Nature

A new highly discriminatory multiplex capillary-based MLVA assay as a tool for the epidemiological survey of Pseudomonas aeruginosa in cystic fibrosis patients.

scientific article published on 11 February 2012

A nose-only apparatus for airborne delivery of Mycobacterium tuberculosis to mice: calibration of biological parameters.

scientific article published on 2 March 2005

A novel multiple locus variable number of tandem repeat (VNTR) analysis (MLVA) method for Propionibacterium acnes

scientific article published on 9 May 2015

A rapid allele variant discrimination method for Yersinia pestis strains based on high-resolution melting curve analysis

scientific article published on September 2009

A synthetic probe STR 14C19, detects a new polymorphic locus at 16pter (D16S282).

scientific article

A synthetic probe, STR 16018, detects a new polymorphic locus at 12qter (Dl2S55) ⬇️

scientific article published on July 25, 1991

A synthetic probe, STR 16C17, detects a new polymorphic locus at 17pter (D17S450) ⬇️

scientific article published on July 25, 1991

A synthetic probe, STR 16C17, detects a new polymorphic locus at l7pter (D17S450) ⬇️

scientific article published on July 25, 1991

A synthetic probe, STR 16C2, detects a new polymorphic locus at 5pter (D5S206) ⬇️

scientific article published on July 25, 1991

Allelic loss of the short arm of chromosome 4 in neuroblastoma suggests a novel tumour suppressor gene locus

scientific article published on 01 June 1996

Analysis of distribution in the human, pig, and rat genomes points toward a general subtelomeric origin of minisatellite structures.

scientific article

Analysis of the three Yersinia pestis CRISPR loci provides new tools for phylogenetic studies and possibly for the investigation of ancient DNA.

scientific article published on January 2007

And Then There Were Three: Discovering the Role of CRISPRs

scientific article published on 01 December 2019

Assessment of genetic stability of Brucella melitensis Rev 1 vaccine strain by multiple-locus variable-number tandem repeat analysis

article

Associations between Mycobacterium tuberculosis Beijing genotype and drug resistance to four first-line drugs: A survey in China.

scientific article published on 29 December 2017

Brucella inopinata sp. nov., isolated from a breast implant infection

scientific article

Brucella microti sp. nov., isolated from the common vole Microtus arvalis

scientific article

Brucella papionis sp. nov., isolated from baboons (Papio spp.).

scientific article

Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts

scientific article published on 16 March 2017

Brucella vulpis sp. nov., isolated from mandibular lymph nodes of red foxes (Vulpes vulpes).

scientific article

CEB 13 detects a VNTR locus (Het: 93%) on chromosome 7q.

scientific article

CEB 15 detects a VNTR locus (Het: 92%) on chromosome 1p ⬇️

scientific article published on April 1, 1992

CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

scientific article

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

scientific article published in July 2018

CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers

scientific article published on 01 January 2020

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

scientific article

CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats.

scientific article published on 28 April 2008

Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping.

scientific article

Characterization of genetic diversity of Bacillus anthracis in France by using high-resolution melting assays and multilocus variable-number tandem-repeat analysis

scientific article published on 12 October 2011

Characterization of sixteen Achromobacter xylosoxidans phages from Abidjan, Côte d'Ivoire, isolated on a single clinical strain

scientific article published on 02 January 2020

Children of chernobyl cleanup workers do not show elevated rates of mutations in minisatellite alleles

scientific article

Clostridium botulinum group I strain genotyping by 15-locus multilocus variable-number tandem-repeat analysis

scientific article published on 19 October 2011

Clustered regularly interspaced short palindromic repeats (CRISPRs) for the genotyping of bacterial pathogens.

scientific article published on January 2009

Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade

scientific article

Comparison of minisatellite polymorphisms in the Bacillus cereus complex: a simple assay for large-scale screening and identification of strains most closely related to Bacillus anthracis

scientific article published on November 2005

Comparison of multiple-locus variable-number tandem-repeat analysis with other PCR-based methods for typing Brucella suis isolates

scientific article published on 17 October 2007

Comparison of two commercial assays for the characterization of rpoB mutations in Mycobacterium tuberculosis and description of new mutations conferring weak resistance to rifampicin.

scientific article

Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire

scientific article published on 03 January 2019

Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A.

scientific article

Complex recombination events at the hypermutable minisatellite CEB1 (D2S90).

scientific article published on July 1994

Correction: Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade.

scientific article published on 27 June 2017

DNA-DNA hybridization study of Burkholderia species using genomic DNA macro-array analysis coupled to reverse genome probing.

scientific article

Detection of polymorphic loci in complex genomes with synthetic tandem repeats

scientific article published on 01 March 1992

Detection of single and multiple polymorphic loci by synthetic tandem repeats of short oligonucleotides

scientific article

Development of a Multiple Loci Variable Number of Tandem Repeats Analysis (MLVA) to Unravel the Intra-Pathovar Structure of Pseudomonas syringae pv. actinidiae Populations Worldwide.

scientific article published on 11 August 2015

Development of a multiple-locus variable-number tandem-repeat typing scheme for genetic fingerprinting of Burkholderia cenocepacia and application to nationwide epidemiological analysis

scientific article

Diversity of Acinetobacter baumannii in four French military hospitals, as assessed by multiple locus variable number of tandem repeats analysis

scientific article

Draft Genome Sequences of Five Yersinia pseudotuberculosis ST19 Isolates and One Isolate Variant

scientific article published on March 2013

Draft Genome Sequences of Two Yersinia pseudotuberculosis ST43 (O:1b) Strains, B-7194 and B-7195

scientific article published on 18 July 2013

European Gene Mapping Project (EUROGEM): Breakpoint panels for human chromosomes based on the CEPH reference families

article

Evaluation and selection of tandem repeat loci for Streptococcus pneumoniae MLVA strain typing

scientific article

Evaluation of Brucella MLVA typing for human brucellosis

scientific article published on 03 January 2007

Evaluation of a multilocus variable-number tandem-repeat analysis scheme for typing human Brucella isolates in a region of brucellosis endemicity

scientific article published on 15 October 2008

Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing

scientific article

Failure of a short-term antibiotic therapy for human brucellosis using ciprofloxacin. A study on in vitro susceptibility of Brucella strains

scientific article

Fieldable genotyping of Bacillus anthracis and Yersinia pestis based on 25-loci Multi Locus VNTR Analysis

scientific article

Further evidence for elevated human minisatellite mutation rate in Belarus eight years after the Chernobyl accident

scientific article published on 01 November 1997

Generation of a CRISPR database for Yersinia pseudotuberculosis complex and role of CRISPR-based immunity in conjugation.

scientific article published on 25 February 2015

Genetic Diversity of Brucella melitensis in Kazakhstan in Relation to World-Wide Diversity

scientific article published on 13 August 2019

Genetic diversity of Francisella tularensis subsp. holarctica in Kazakhstan

scientific article published on 17 May 2021

Genetic mapping of three human homologues of murine t-complex genes localizes TCP10 to 6q27, 15 cM distal to TCP1 and PLG

scientific article (publication date: April 1992)

Genetic mapping through the use of synthetic tandem repeats in the mouse genome

scientific article published in January 1993

Genotypic Expansion Within the Population Structure of Classical Brucella Species Revealed by MLVA16 Typing of 1404 Brucella Isolates From Different Animal and Geographic Origins, 1974-2006

scientific article published on 12 July 2018

Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci

scientific article

Genotyping of Bacillus anthracis strains based on automated capillary 25-loci multiple locus variable-number tandem repeats analysis

scientific article published on 6 April 2006

Genotyping of French Bacillus anthracis strains based on 31-loci multi locus VNTR analysis: epidemiology, marker evaluation, and update of the internet genotype database

scientific article

High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of "Mycobacterium canettii" strains indicates that the M. tuberculosis complex is a recently emerged clone of "

scientific article published on July 2004

High resolution typing of Chlamydophila psittaci by multilocus VNTR analysis (MLVA).

scientific article published on 17 December 2007

High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing

scientific article

High throughput multiple locus variable number of tandem repeat analysis (MLVA) of Staphylococcus aureus from human, animal and food sources

scientific article

High-throughput sequencing of Bacillus anthracis in France: investigating genome diversity and population structure using whole-genome SNP discovery

scientific article

High-throughput typing method to identify a non-outbreak-involved Legionella pneumophila strain colonizing the entire water supply system in the town of Rennes, France

scientific article

Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource

scientific article

Identification of variable-number tandem-repeat (VNTR) sequences in Acinetobacter baumannii and interlaboratory validation of an optimized multiple-locus VNTR analysis typing scheme

scientific article

Identification of variable-number tandem-repeat (VNTR) sequences in Legionella pneumophila and development of an optimized multiple-locus VNTR analysis typing scheme

scientific article published on 24 January 2007

Improved multiple-locus variable-number tandem-repeat assay for Staphylococcus aureus genotyping, providing a highly informative technique together with strong phylogenetic value.

scientific article published on 26 August 2009

Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats

scientific article

Insights from Bacillus anthracis strains isolated from permafrost in the tundra zone of Russia.

scientific article published on 22 May 2019

Intraspecies biodiversity of the genetically homologous species Brucella microti

scientific article

Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption

article

Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire

scientific article published on 26 June 2015

Investigation of the population structure of Legionella pneumophila by analysis of tandem repeat copy number and internal sequence variation.

scientific article published on 26 May 2011

Investigation on Mycobacterium tuberculosis diversity in China and the origin of the Beijing clade

scientific article

Isolation of Brucella microti from mandibular lymph nodes of red foxes, Vulpes vulpes, in lower Austria

scientific article

Isolation of Brucella microti from soil

scientific article published in August 2008

Isolation of human minisatellite loci detected by synthetic tandem repeat probes: direct comparison with cloned DNA fingerprinting probes

scientific article

Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage

scientific article

Linkage and physical mapping of rat microsatellites derived from minisatellite loci

scientific article published in April 1999

Longitudinal survey of Staphylococcus aureus in cystic fibrosis patients using a multiple-locus variable-number of tandem-repeats analysis method

scientific article

MLVA-16 typing of 295 marine mammal Brucella isolates from different animal and geographic origins identifies 7 major groups within Brucella ceti and Brucella pinnipedialis

scientific article published on 20 July 2009

MLVA16 typing of Portuguese human and animal Brucella melitensis and Brucella abortus isolates.

scientific article

Mapping of a gene for long QT syndrome to chromosome 4q25-27

scientific article

Meiotic instability of human minisatellite CEB1 in yeast requires DNA double-strand breaks

scientific article published on 01 November 1999

Minisatellite polymorphism as a tool to distinguish closely relatedLactococcus lactisstrains

scientific article published on 01 July 2005

Minisatellites: mutability and genome architecture.

scientific article published in July 2000

Modulation of polymorphic loci detection with synthetic tandem repeat variants

scientific article published on 01 January 1992

Molecular Epidemiology of Mycoplasma pneumoniae: Genotyping Using Single Nucleotide Polymorphisms and SNaPshot Technology

scientific article

Molecular characteristics of "Mycobacterium canettii" the smooth Mycobacterium tuberculosis bacilli

scientific article

Molecular characterization of Brucella species from Zimbabwe

scientific article published on 20 May 2019

Molecular characterization of Coxiella burnetii isolates by infrequent restriction site-PCR and MLVA typing

scientific article published on 26 April 2006

Molecular epidemiology of human and animal tuberculosis in Ibadan, Southwestern Nigeria.

scientific article published on 24 February 2011

Molecular-cytogenetic detection of a deletion of 1p36.3.

scientific article

Multiple locus variable number of tandem repeats analysis

scientific article

Multiple-locus variable-number tandem-repeat analysis for longitudinal survey of sources of Pseudomonas aeruginosa infection in cystic fibrosis patients.

scientific article published on 15 August 2007

Multiple-locus variable-number tandem-repeat analysis genotyping of human Brucella isolates from Turkey

scientific article

No Increase in Female Recombination Frequency in the Distal Part of the Human Pseudoautosomal Region

scientific article published on 01 December 1994

On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing

scientific article

PCR assay for chromosome 1p deletion in small neuroblastoma samples

scientific article published on 01 October 1992

Physical mapping of the holoprosencephaly critical region on chromosome 7q36.

scientific article published on March 1993

Polymers of random short oligonucleotides detect polymorphic loci in the human genome

scientific article

Predicting human minisatellite polymorphism

scientific article

Progenitor “Mycobacterium canettii” clone responsible for lymph node tuberculosis epidemic, Djibouti

scientific article

Pseudoautosomal DNA sequences in the pairing region of the human sex chromosomes

scientific article published in Nature

Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa.

scientific article

Rapid and early determination of sex using trophoblast biopsy specimens and Y chromosome specific DNA probes

scientific article

Rapid identification of international multidrug-resistant Pseudomonas aeruginosa clones by multiple-locus variable number of tandem repeats analysis and investigation of their susceptibility to lytic bacteriophages

scientific article

Recent human-specific spreading of a subtelomeric domain

scientific article published on July 1998

Report of the second international workshop on human chromosome 5 mapping: consensus genetic map

scientific article published on January 1, 1992

Russian isolates enlarge the known geographic diversity of Francisella tularensis subsp. mediasiatica

scientific article

Segmental polymorphisms in the proterminal regions of a subset of human chromosomes

scientific article published on November 2002

Selection and validation of a multilocus variable-number tandem-repeat analysis panel for typing Shigella spp.

scientific article published on 23 January 2008

Significance of the identification in the Horn of Africa of an exceptionally deep branching Mycobacterium tuberculosis clade

scientific article published in 2012

Stability of microsatellites and minisatellites in Bloom syndrome, a human syndrome of genetic instability

scientific article published on April 1996

Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA).

scientific article

Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis

scientific article

The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa

scientific article published on 18 June 2020

The CEPH Consortium Linkage Map of Human Chromosome 13

article

The CEPH consortium linkage map of human chromosome 16

scientific article published on 01 January 1995