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List of works by Claudine Chaouiya

A Modeling Approach to Explain Mutually Exclusive and Co-Occurring Genetic Alterations in Bladder Tumorigenesis

scientific article published on 3 August 2015

A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties

article

A description of dynamical graphs associated to elementary regulatory circuits

scientific article published on 01 October 2003

A discrete model of Drosophila eggshell patterning reveals cell-autonomous and juxtacrine effects

scientific article

Abstracts from the 3rd International Society for Computational Biology (ISCB) Student Council Symposium at the 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, 21 July 2007

scholarly article by Adrien Fauré published in January 2007

Addressing <i>barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology</i>

Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae

scientific article published on 20 October 2020

Automatic Inference of Regulatory and Dynamical Properties from Incomplete Gene Interaction and Expression Data

article

Bringing dicynodonts back to life: paleobiology and anatomy of a new emydopoid genus from the Upper Permian of Mozambique

scientific article published in 2013

Composition and abstraction of logical regulatory modules: application to multicellular systems

scientific article published on 22 January 2013

Cooperative development of logical modelling standards and tools with CoLoMoTo

scientific article published on 25 January 2015

Cooperative development of logical modelling standards and tools with CoLoMoTo

article

Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks

article

Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling ⬇️

scientific article published on September 2, 2010

Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.

scientific article published on July 2006

Dynamical analysis of the regulatory network defining the dorsal-ventral boundary of the Drosophila wing imaginal disc

scientific article published on September 2006

Dynamical modeling and analysis of large cellular regulatory networks.

scientific article published on June 2013

Dynamical modeling of biological regulatory networks

scientific article published on 28 December 2005

Dynamically consistent reduction of logical regulatory graphs

article

Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control

article by Aurélien Nald et al published 2012 in Lecture Notes in Computer Science

Efficient Verification for Logical Models of Regulatory Networks

article

EpiLog: A software for the logical modelling of epithelial dynamics

article

Estimating Attractor Reachability in Asynchronous Logical Models

article

GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks

scientific article published on 24 January 2006

Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors

scientific article published on 26 March 2020

Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0.

scientific article

Logical Modeling and Dynamical Analysis of Cellular Networks

scientific article

Logical Modelling of Gene Regulatory Networks with GINsim ⬇️

scientific article published on January 1, 2012

Logical modelling and analysis of cellular regulatory networks with GINsim 3.0

scientific article published on 27 March 2018

Logical modelling of regulatory networks with GINsim 2.3.

scientific article

Logical modelling of regulatory networks, methods and applications

scientific article

Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc

scientific article published on August 2008

Logical modelling uncovers developmental constraints for primary sex determination of chicken gonads.

scientific article published in May 2018

Majority rules with random tie-breaking in Boolean gene regulatory networks

scientific article published in 2013

Mapping multivalued onto Boolean dynamics

scientific article published on 22 September 2010

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

article by Dagmar Waltemath et al published 15 March 2014 in Standards in genomic sciences

Model Checking Logical Regulatory Networks

article

Model checking to assess T-helper cell plasticity

scientific article

Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance

scientific article

Modelling the onset of senescence at the G1/S cell cycle checkpoint

scientific article published on 27 October 2014

Modular logical modelling of the budding yeast cell cycle

scientific article published on 31 July 2009

Path2Models: large-scale generation of computational models from biochemical pathway maps

scientific article

Petri net modelling of biological networks

scientific article published on 11 July 2007

Petri net modelling of biological regulatory networks

article published in 2008

Petri net representation of multi-valued logical regulatory graphs

article

Primary sex determination of placental mammals: a modelling study uncovers dynamical developmental constraints in the formation of Sertoli and granulosa cells

scientific article

Qualitative modelling of biological regulatory networks combining a logical multi-valued formalism and Petri nets

article

Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.coli

scientific article

Reduction of logical models of regulatory networks yields insight into dynamical properties

article

Relating Formalisms for the Qualitative Modelling of Regulatory Networks

SBML Level 3 package: Qualitative Models, Version 1, Release 1.

scientific article published in June 2015

SBML Level 3: an extensible format for the exchange and reuse of biological models

scientific article published on 01 August 2020

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

scientific article

Segmenting the fly embryo: logical analysis of the role of the segment polarity cross-regulatory module

scientific article published in January 2008

Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop

scientific article published on 21 April 2020

Stable States of Boolean Regulatory Networks Composed Over Hexagonal Grids

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks.

scientific article

The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST)

scientific article published on 30 June 2020

The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.

scientific article published on 04 September 2015

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

scientific article published on 20 June 2019

The extended kanban control system for production coordination of assembly manufacturing systems

article

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