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List of works by Bette Korber

A Multi-Component Prime-Boost Vaccination Regimen with a Consensus MOMP Antigen Enhances Chlamydia trachomatis Clearance

scientific article published on 28 April 2016

A Plea for Justice for Jailed Medical Workers

scientific article published in Science

A centralized gene-based HIV-1 vaccine elicits broad cross-clade cellular immune responses in rhesus monkeys

scholarly article

A computational framework for the analysis of peptide microarray antibody binding data with application to HIV vaccine profiling

scientific article published on 13 June 2013

A group M consensus envelope glycoprotein induces antibodies that neutralize subsets of subtype B and C HIV-1 primary viruses

scientific article published on September 2006

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes

scientific article

A mechanistic understanding of allosteric immune escape pathways in the HIV-1 envelope glycoprotein

scientific article

A multiple-alignment based primer design algorithm for genetically highly variable DNA targets

scientific article

A multivalent clade C HIV-1 Env trimer cocktail elicits a higher magnitude of neutralizing antibodies than any individual component

scientific article

A new classification for HIV-1

scientific article

A signature in HIV-1 envelope leader peptide associated with transition from acute to chronic infection impacts envelope processing and infectivity

scientific article

A single, continuous metric to define tiered serum neutralization potency against HIV.

scientific article published on 19 January 2018

AIDS research pioneer Gerry Myers dies

scientific article

AIDS/HIV. Converging on an HIV vaccine

scientific article

Advantage of rare HLA supertype in HIV disease progression

scientific article

Alternative effector-function profiling identifies broad HIV-specific T-cell responses in highly HIV-exposed individuals who remain uninfected

scientific article published on 23 September 2014

An African HIV-1 sequence from 1959 and implications for the origin of the epidemic ⬇️

scientific article published on February 5, 1998

Analysis of HIV-1 subtype B third variable region peptide motifs for induction of neutralizing antibodies against HIV-1 primary isolates

scientific article published on 20 October 2005

Analysis of V2 antibody responses induced in vaccinees in the ALVAC/AIDSVAX HIV-1 vaccine efficacy trial

scientific article

Ancestral and consensus envelope immunogens for HIV-1 subtype C.

scientific article

Antigenicity and immunogenicity of HIV-1 consensus subtype B envelope glycoproteins

scientific article published on 13 November 2006

Antigenicity and immunogenicity of a synthetic human immunodeficiency virus type 1 group m consensus envelope glycoprotein

scientific article published on January 2005

Antigenicity and immunogenicity of transmitted/founder, consensus, and chronic envelope glycoproteins of human immunodeficiency virus type 1

scientific article published on 30 January 2013

Antigenicity-defined conformations of an extremely neutralization-resistant HIV-1 envelope spike

scientific article

Association between Maternal and Infant Class I and II HLA Alleles and of Their Concordance with the Risk of Perinatal HIV Type 1 Transmission

article

Associations between amino acids in the evolution of HIV type 1 protease sequences under indinavir therapy

scientific article

Autologous neutralizing antibodies to the transmitted/founder viruses emerge late after simian immunodeficiency virus SIVmac251 infection of rhesus monkeys

scientific article (publication date: June 2010)

Breadth of cellular and humoral immune responses elicited in rhesus monkeys by multi-valent mosaic and consensus immunogens

scientific article published on 21 April 2012

Breadth of human immunodeficiency virus-specific neutralizing activity in sera: clustering analysis and association with clinical variables

scientific article

Broadly neutralizing antibodies targeting the HIV-1 envelope V2 apex confer protection against a clade C SHIV challenge

scientific article published on September 2017

Broadly targeted CD8⁺ T cell responses restricted by major histocompatibility complex E.

scientific article published on 21 January 2016

Building on the past to define an efficient path to an HIV vaccine ⬇️

scientific article published on July 1, 2011

CATNAP: a tool to compile, analyze and tally neutralizing antibody panels

scientific article published on 4 June 2015

Capturing viral diversity for in-vitro test reagents and HIV vaccine immunogen design

scientific article published on May 2007

Centralized HIV-1 envelope immunogens and neutralizing antibodies

scientific article

Centralized immunogens as a vaccine strategy to overcome HIV-1 diversity

scientific article published in August 2004

Characterization and comparison of recombinant simian immunodeficiency virus from drill (Mandrillus leucophaeus) and mandrill (Mandrillus sphinx) isolates.

scientific article

Characterization and immunogenicity of a novel mosaic M HIV-1 gp140 trimer

scientific article

Characterization of novel simian immunodeficiency viruses from red-capped mangabeys from Nigeria (SIVrcmNG409 and -NG411)

scientific article

Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.

scientific article published on 13 December 2006

Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation

scientific article

Comparison of Immunogenicity in Rhesus Macaques of Transmitted-Founder, HIV-1 Group M Consensus, and Trivalent Mosaic Envelope Vaccines Formulated as a DNA Prime, NYVAC, and Envelope Protein Boost

scientific article published on 8 April 2015

Comparison of viral Env proteins from acute and chronic infections with subtype C human immunodeficiency virus type 1 identifies differences in glycosylation and CCR5 utilization and suggests a new strategy for immunogen design

scientific article published on 24 April 2013

Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth

article

Comprehensive cross-clade neutralization analysis of a panel of anti-human immunodeficiency virus type 1 monoclonal antibodies

scientific article

Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities

scientific article published on March 2004

Consistent patterns of change during the divergence of human immunodeficiency virus type 1 envelope from that of the inoculated virus in simian/human immunodeficiency virus-infected macaques

scientific article

Construction and evaluation of novel rhesus monkey adenovirus vaccine vectors

scientific article

Control of human immunodeficiency virus replication by cytotoxic T lymphocytes targeting subdominant epitopes

scientific article published on 20 December 2005

Cooperation of B cell lineages in induction of HIV-1-broadly neutralizing antibodies

scientific article

Coping with viral diversity in HIV vaccine design: a response to Nickle et al.

scientific article published on January 2008

Correction for Hraber et al., "Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments".

scientific article

Correction: Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization

scientific article published on 25 September 2017

Cross-reactive monoclonal antibodies to multiple HIV-1 subtype and SIVcpz envelope glycoproteins

scientific article published on 09 September 2009

Cross-reactive potential of human T-lymphocyte responses in HIV-1 infection

scientific article published on 14 May 2014

Cross-subtype T-cell immune responses induced by a human immunodeficiency virus type 1 group m consensus env immunogen

scientific article

Cytotoxic T-lymphocyte cross-reactivity among different human immunodeficiency virus type 1 clades: implications for vaccine development

scientific article published in November 1997

D614G Spike Mutation Increases SARS CoV-2 Susceptibility to Neutralization

scientific article published on 01 December 2020

Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

scientific article published on 6 February 2008

Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells

scientific article published on 15 October 2015

Defining the risk of SARS-CoV-2 variants on immune protection

scientific article published on 31 March 2022

Definition of the viral targets of protective HIV-1-specific T cell responses

scientific article published on 7 December 2011

Design and pre-clinical evaluation of a universal HIV-1 vaccine

scientific article published in 2007

Designing and testing broadly-protective filoviral vaccines optimized for cytotoxic T-lymphocyte epitope coverage

scientific article

Detection of HIV-1 p24 Gag in plasma by a nanoparticle-based bio-barcode-amplification method

scientific article

Difficult-to-neutralize global HIV-1 isolates are neutralized by antibodies targeting open envelope conformations

scientific article published on 01 July 2019

Distinct evolutionary pressures underlie diversity in simian immunodeficiency virus and human immunodeficiency virus lineages

scientific article

Diversity considerations in HIV-1 vaccine selection

scientific article

Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.

scientific article published in December 2004

Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape

scientific article

Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein

scientific article

Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing

scientific article

Emergence of SARS-CoV-2 through recombination and strong purifying selection

scientific article published on 29 May 2020

Engineering well-expressed, V2-immunofocusing HIV-1 envelope glycoprotein membrane trimers for use in heterologous prime-boost vaccine regimens

scientific article published on 22 October 2021

Enhanced detection of human immunodeficiency virus type 1-specific T-cell responses to highly variable regions by using peptides based on autologous virus sequences

scientific article

Envelope vaccination shapes viral envelope evolution following simian immunodeficiency virus infection in rhesus monkeys

scientific article

Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission

scientific article published in March 2004

Epigraph: A Vaccine Design Tool Applied to an HIV Therapeutic Vaccine and a Pan-Filovirus Vaccine

scientific article (publication date: 5 October 2016)

Epitope Escape Mutation and Decay of Human Immunodeficiency Virus Type 1-Specific CTL Responses ⬇️

scientific article published on November 15, 2003

Epitope-specific CD8+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection

scientific article

Estimating time since infection in early homogeneous HIV-1 samples using a poisson model

scientific article

Evaluation of Different V3 Peptides in an Enzyme Immunoassay for Specific HIV Type 1 Group O Antibody Detection ⬇️

scientific article published on July 20, 1998

Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1

scientific article

Evolution and transmission of stable CTL escape mutations in HIV infection

scientific article published in Nature

Evolution of hepatitis C viral quasispecies after liver transplantation

scientific article published in November 2002

Evolutionary and immunological implications of contemporary HIV-1 variation.

scientific article

Expanded breadth of the T-cell response to mosaic human immunodeficiency virus type 1 envelope DNA vaccination

scientific article published on 24 December 2008

Expression and evolutionary analysis of West Nile virus (Merion strain).

scientific article published on December 2005

Extensive HLA class I allele promiscuity among viral CTL epitopes

scientific article published on September 2007

Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections

scientific article published on 21 February 2007

Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization

scientific article

Fitness costs and diversity of the cytotoxic T lymphocyte (CTL) response determine the rate of CTL escape during acute and chronic phases of HIV infection

scientific article

Fitness costs of rifampicin resistance in Mycobacterium tuberculosis are amplified under conditions of nutrient starvation and compensated by mutation in the β' subunit of RNA polymerase

scientific article published on 26 February 2014

Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

scientific article published in Science

Full-length HIV-1 immunogens induce greater magnitude and comparable breadth of T lymphocyte responses to conserved HIV-1 regions compared with conserved-region-only HIV-1 immunogens in rhesus monkeys

scientific article published on 15 August 2012

Genetic and functional analysis of full-length human immunodeficiency virus type 1 env genes derived from brain and blood of patients with AIDS.

scientific article published on November 2003

Genetic and neutralization properties of subtype C human immunodeficiency virus type 1 molecular env clones from acute and early heterosexually acquired infections in Southern Africa

scientific article

Genetic and phenotypic analyses of human immunodeficiency virus type 1 escape from a small-molecule CCR5 inhibitor

scientific article published on March 2004

Genetic characterization of diverse HIV-1 strains in an immigrant population living in New York City.

scientific article

Genetic evaluation of suspected cases of transient HIV-1 infection of infants

scientific article published in May 1998

Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

scientific article published on June 2009

Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies

scientific article

Genital tract sequestration of SIV following acute infection

scientific article

Genotype 1 and global hepatitis C T-cell vaccines designed to optimize coverage of genetic diversity.

scientific article published on 6 January 2010

Global panel of HIV-1 Env reference strains for standardized assessments of vaccine-elicited neutralizing antibodies

scientific article

Graph-based optimization of epitope coverage for vaccine antigen design

scientific article published on 29 January 2017

HIV classification using the coalescent theory

scientific article

HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC

scientific article

HIV sequence databases

scientific article

HIV type 1 molecular clones able to use the Bonzo/STRL-33 coreceptor for virus entry

scientific article

HIV-1 Consensus Envelope-Induced Broadly Binding Antibodies

scientific article

HIV-1 Nef is preferentially recognized by CD8 T cells in primary HIV-1 infection despite a relatively high degree of genetic diversity

scientific article

HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design

article

HIV-1 intra-subtype superinfection rates: estimates using a structured coalescent with recombination

scientific article

HIV-1 intrapatient sequence diversity in the immunogenic V3 region

scientific article published on August 1, 1992

HIV-1 nomenclature proposal

scientific article published in April 2000

HIV-1 reverse transcriptase. A diversity generator and quasispecies regulator.

scientific article published on October 1993

HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus

scientific article published in November 2002

HIV-1 vaccine development after STEP.

scientific article

HIV-Host Interactions: Implications for Vaccine Design

scientific article

HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load

scientific article published on 23 April 2008

HLA-B63 presents HLA-B57/B58-restricted cytotoxic T-lymphocyte epitopes and is associated with low human immunodeficiency virus load

scientific article

Hepatitis C genotype 1 mosaic vaccines are immunogenic in mice and induce stronger T-cell responses than natural strains

scientific article published on 5 December 2012

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.

scientific article

Highly complex neutralization determinants on a monophyletic lineage of newly transmitted subtype C HIV-1 Env clones from India

scientific article published on 23 January 2009

Histidine 375 Modulates CD4 Binding in HIV-1 CRF01_AE Envelope Glycoproteins

scientific article published on 07 December 2016

Host genetic profiles predict virological and immunological control of HIV-1 infection in adolescents

scientific article published in November 2002

Human Non-neutralizing HIV-1 Envelope Monoclonal Antibodies Limit the Number of Founder Viruses during SHIV Mucosal Infection in Rhesus Macaques

scientific article

Human leukocyte antigen-associated sequence polymorphisms in hepatitis C virus reveal reproducible immune responses and constraints on viral evolution

scientific article published in August 2007

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

scientific article (publication date: 27 May 2008)

Identification of a novel clade of human immunodeficiency virus type 1 in Democratic Republic of Congo

scientific article published in July 2002

Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120.

scientific article

Identification of broadly neutralizing antibody epitopes in the HIV-1 envelope glycoprotein using evolutionary models

scientific article

Immune control of HIV: the obstacles of HLA and viral diversity

scientific article

Immunogenicity of NYVAC prime-protein boost HIV-1 envelope vaccination and SHIV challenge of nonhuman primates

scientific article published on 7 February 2018

Immunoinformatics comes of age

scientific article

Immunological and virological mechanisms of vaccine-mediated protection against SIV and HIV.

scientific article published on 18 December 2013

Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies

scientific article

Improving neutralization potency and breadth by combining broadly reactive HIV-1 antibodies targeting major neutralization epitopes

scientific article

Increased Valency of Conserved-mosaic Vaccines Enhances the Breadth and Depth of Epitope Recognition

scientific article published on 19 November 2015

Increased detection of HIV-specific T cell responses by combination of central sequences with comparable immunogenicity

article

Influence of HLA Alleles on the Rate of Progression of Vertically Transmitted HIV Infection in Children: Association of Several HLA-DR13 Alleles with Long-Term Survivorship and the Potential Association of HLA-A2301 with Rapid Progression to AIDS

article

Integrated sequence and immunology filovirus database at Los Alamos

scientific article published on 21 April 2016

Killer cell immunoglobulin-like receptors (KIR) of the African-origin sabaeus monkey: evidence for recombination events in the evolution of KIR.

scientific article

Lack of strong immune selection pressure by the immunodominant, HLA-A*0201-restricted cytotoxic T lymphocyte response in chronic human immunodeficiency virus-1 infection

scientific article published on June 1998

Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes

scientific article published on 15 May 2006

Limitations of a molecular clock applied to considerations of the origin of HIV-1.

scientific article published in June 1998

Liver transplantation with hepatitis C virus-infected graft: interaction between donor and recipient viral strains

scientific article published in July 2003

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

scientific article

Longitudinal and cross-sectional analysis of cytotoxic T lymphocyte responses and their relationship to vertical human immunodeficiency virus transmission. ARIEL Project Investigators

scientific article published in November 1998

Los Alamos Hepatitis C Immunology Database

article

Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1.

scientific article published on 04 May 2009

Maternal viral load and rate of disease progression among vertically HIV-1-infected children: an international meta-analysis

scientific article published in January 2004

Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody

scientific article

Modeling sequence evolution in HIV-1 infection with recombination

scientific article published on 6 April 2013

Modeling sequence evolution in acute HIV-1 infection

scientific article published on 04 August 2009

Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys

scientific article

Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys

scientific article published on 21 February 2010

Mother-to-child transmission in the United States of subtypes D and A/G human immunodeficiency virus type 1.

scientific article published in April 2002

Multiple lineages of monkeypox virus detected in the United States, 2021–2022

scientific article published on 4 November 2022

Mycobacterium tuberculosis--heterogeneity revealed through whole genome sequencing

scientific article published on 3 January 2012

Novel Conserved-region T-cell Mosaic Vaccine With High Global HIV-1 Coverage Is Recognized by Protective Responses in Untreated Infection

scientific article published on 08 January 2016

Nucleoside-modified mRNA vaccines induce potent T follicular helper and germinal center B cell responses.

scientific article

Optimal Combinations of Broadly Neutralizing Antibodies for Prevention and Treatment of HIV-1 Clade C Infection

scientific article

P.337 Rational design of HCV vaccine cocktails that maximize coverage of potential CTL epitopes

P09-21 LB. Deep sequencing of HIV-1 from acute infection: low initial diversity, and rapid but variable CTL escape

article

P16-13. A greater breadth of HIV-1-specific T cell responses detected using mosaic peptides compare to consensus peptides.

scientific article published on 22 October 2009

P16-24. Crucial contribution of sub-dominant HLA-C allele restricted CTL responses to the control of HIV

article

P16-42. Characterisation of HIV-1 specific T-cell responses in exposed uninfected individuals from a London cohort

scientific article

P17-09. Immunization with a single HIV-1 envelope sequence can generate CD8+ T lymphocytes capable of recognizing multiple variant forms of envelope

article

P19-01. Pre-clinical immunogenicity of mosaic Asian AE/B HIV-1 DNA vaccine in mice.

scientific article

P20-21 LB. Gene-to-gene differences in evolutionary rate between HIV-1 and natural SIV from sooty mangabeys: implications for vaccine tests in non-human primates.

scientific article published on 22 October 2009

Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments

scientific article

Partial protection of Simian immunodeficiency virus (SIV)-infected rhesus monkeys against superinfection with a heterologous SIV isolate

scientific article published on 07 January 2009

Perinatal transmission of human immunodeficiency virus type 1 by pregnant women with RNA virus loads <1000 copies/ml.

scientific article published on 12 January 2001

Phenotypic properties of transmitted founder HIV-1

scientific article

Plasma IgG to linear epitopes in the V2 and V3 regions of HIV-1 gp120 correlate with a reduced risk of infection in the RV144 vaccine efficacy trial

scientific article

Polyvalent vaccine approaches to combat HIV-1 diversity

scientific article published on January 2017

Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants

scientific article published on 24 December 2006

Potent and broad HIV-neutralizing antibodies in memory B cells and plasma

scientific article published on January 2017

Potential of conventional & bispecific broadly neutralizing antibodies for prevention of HIV-1 subtype A, C & D infections.

scientific article published on 5 March 2018

Prevalence of broadly neutralizing antibody responses during chronic HIV-1 infection

scientific article

Protection against a mixed SHIV challenge by a broadly neutralizing antibody cocktail.

scientific article published on September 2017

Protective efficacy of a global HIV-1 mosaic vaccine against heterologous SHIV challenges in rhesus monkeys ⬇️

scientific article published on 24 October 2013

Proteome-wide analysis of HIV-specific naive and memory CD4(+) T cells in unexposed blood donors

scientific article

Public health. A sound rationale needed for phase III HIV-1 vaccine trials

scientific article

Quantifying residual HIV-1 replication in patients receiving combination antiretroviral therapy

scientific article published in May 1999

Quantifying the diversification of hepatitis C virus (HCV) during primary infection: estimates of the in vivo mutation rate

scientific article

Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants

scientific article published on 04 February 2009

Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo

scientific article

Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection

scientific article published on 31 July 2017

Rare HLA drive additional HIV evolution compared to more frequent alleles

scientific article published on March 2009

Recapitulation of HIV-1 Env-antibody coevolution in macaques leading to neutralization breadth

scientific article published on 19 November 2020

Recombination-mediated escape from primary CD8+ T cells in acute HIV-1 infection.

scientific article

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

scientific article

Regulation of gene expression by interferons: control of H-2 promoter responses

scientific article published on March 1988

Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection

scientific article

Relative dominance of Gag p24-specific cytotoxic T lymphocytes is associated with human immunodeficiency virus control

scientific article

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

scientific article published on 7 November 2011

Role of maternal autologous neutralizing antibody in selective perinatal transmission of human immunodeficiency virus type 1 escape variants

scientific article

SARS-CoV-2 variant B.1.1.7 is susceptible to neutralizing antibodies elicited by ancestral Spike vaccines

scientific article published in March 2021

Safety and antiviral activity of triple combination broadly neutralizing monoclonal antibody therapy against HIV-1: a phase 1 clinical trial

scientific article published on 12 May 2022

Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels

scientific article

Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2

scientific article published on 01 May 2020

Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.

scientific article published on March 2017

Strain-Specific V3 and CD4 Binding Site Autologous HIV-1 Neutralizing Antibodies Select Neutralization-Resistant Viruses

scientific article

Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates

scientific article published on 04 June 2021

Structure and function of CC-chemokine receptor 5 homologues derived from representative primate species and subspecies of the taxonomic suborders Prosimii and Anthropoidea

scientific article published on November 2003

Systematic Analysis of Monoclonal Antibodies against Ebola Virus GP Defines Features that Contribute to Protection

T cell responses in HIV type 1-infected adolescent minorities share similar epitope specificities with whites despite significant differences in HLA class I alleles

scientific article published in November 2003

T-cell vaccine strategies for human immunodeficiency virus, the virus with a thousand faces

scientific article published on 13 May 2009

Targeting of a CD8 T Cell Env Epitope Presented by HLA-B*5802 Is Associated with Markers of HIV Disease Progression and Lack of Selection Pressure

article

The Ariel Project: A prospective cohort study of maternal-child transmission of human immunodeficiency virus type 1 in the era of maternal antiretroviral therapy

scientific article published in February 1999

The KIR and CD94/NKG2 families of molecules in the rhesus monkey

scientific article

The SARS-CoV-2 Spike Variant D614G Favors an Open Conformational State

scientific article published on 26 July 2020

The TRIM5 gene modulates penile mucosal acquisition of simian immunodeficiency virus in rhesus monkeys

scientific article

The Thai Phase III HIV Type 1 Vaccine trial (RV144) regimen induces antibodies that target conserved regions within the V2 loop of gp120.

scientific article

The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data

scientific article (publication date: December 2009)

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

scientific article published on June 2009

The implications of patterns in HIV diversity for neutralizing antibody induction and susceptibility.

scientific article published on September 2009

The mode of delivery and the risk of vertical transmission of human immunodeficiency virus type 1--a meta-analysis of 15 prospective cohort studies

scientific article

The prolonged culture of human immunodeficiency virus type 1 in primary lymphocytes increases its sensitivity to neutralization by soluble CD4.

scientific article published in March 2004

The role of recombination in the emergence of a complex and dynamic HIV epidemic

scientific article

The sequential introduction of HIV-1 subtype B and CRF01AE in Singapore by sexual transmission: accelerated V3 region evolution in a subpopulation of Asian CRF01 viruses

scientific article published in December 2002

The spread of HIV in Africa.

scientific article

Tiered categorization of a diverse panel of HIV-1 Env pseudoviruses for assessment of neutralizing antibodies

scientific article

Timing the ancestor of the HIV-1 pandemic strains

scientific article

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

scientific article

Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin

scientific article

Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA.

scientific article

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

scientific article

Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G

scientific article

Unique mutational patterns in the envelope alpha 2 amphipathic helix and acquisition of length in gp120 hypervariable domains are associated with resistance to autologous neutralization of subtype C human immunodeficiency virus type 1.

scientific article published on 14 March 2007

Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution

scientific article published in June 2001

Vaccine Elicitation of High Mannose-Dependent Neutralizing Antibodies against the V3-Glycan Broadly Neutralizing Epitope in Nonhuman Primates

scientific article

Vaccine-Induced Linear Epitope-Specific Antibodies to Simian Immunodeficiency Virus SIVmac239 Envelope Are Distinct from Those Induced to the Human Immunodeficiency Virus Type 1 Envelope in Nonhuman Primates

scientific article published on 27 May 2015

Vaccine-induced CD8+ T lymphocytes of rhesus monkeys recognize variant forms of an HIV epitope but do not mediate optimal functional activity

scientific article

Vertical T cell immunodominance and epitope entropy determine HIV-1 escape

scientific article

Viral Genome Analysis and Knowledge Management ⬇️

scientific article published on January 1, 2013

Web-based design and evaluation of T-cell vaccine candidates

scientific article published on 29 May 2008

epitopes immediately below the base of the V3 loop of gp120 as targets for the initial autologous neutralizing antibody response in two HIV-1 subtype B-infected individuals

scientific article

jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1.

scientific article

jpHMM: improving the reliability of recombination prediction in HIV-1.

scientific article published on 14 May 2009

jpHMM: improving the reliability of recombination prediction in HIV-1.

scientific article published in January 2010

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