List of works - Jacquelyn S Fetrow

1H, 13C and 15N resonance assignments and secondary structure of the human protein tyrosine phosphatase, PRL-2.

scientific article published in December 2003

A kinetic analysis of the auxin transcriptome reveals cell wall remodeling proteins that modulate lateral root development in Arabidopsis

scientific article

A method of directed random mutagenesis of the yeast chromosome shows that the iso-1-cytochrome c heme ligand His18 is essential

scientific article published on 01 October 1995

A proposed structural model of domain 1 of fasciclin III neural cell adhesion protein based on an inverse folding algorithm

scientific article

Active site profiling to identify protein functional sites in sequences and structures using the Deacon Active Site Profiler (DASP).

scientific article

Algebraic dependency models of protein signal transduction networks from time-series data.

scientific article

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.

scientific article

An approach to functionally relevant clustering of the protein universe: Active site profile-based clustering of protein structures and sequences

scientific article published on 5 January 2017

Analysis of the peroxiredoxin family: using active-site structure and sequence information for global classification and residue analysis

scientific article

Analysis of the structure and stability of omega loop A replacements in yeast iso-1-cytochrome c.

scientific article published on January 1997

Assignment of15N Chemical Shifts and15N Relaxation Measurements for Oxidized and Reduced Iso-1-cytochromec†

scientific article published on 01 April 1999

Automatic derivation of substructures yields novel structural building blocks in globular proteins.

scientific article published on January 1993

Boundary distinction interpretation of microarray data via discrete correlate summation.

scientific article published on 19 September 2011

Broad phenotypic changes associated with gain of radiation resistance in head and neck squamous cell cancer

scientific article

Chemical and Structural Diversity in Cyclooxygenase Protein Active Sites

scientific article published on 01 November 2005

Comparison of Co-Temporal Modeling Algorithms on Sparse Experimental Time Series Data Sets

article

Comparison of topological clustering within protein networks using edge metrics that evaluate full sequence, full structure, and active site microenvironment similarity

scientific article

Conformational and oligomeric effects on the cysteine pK(a) of tryparedoxin peroxidase

scientific article published on August 2010

Continuous cotemporal probabilistic modeling of systems biology networks from sparse data

scientific article

Corrigendum: Mutating a Highly Conserved Residue in Diverse Cytochrome P450s Facilitates Diastereoselective Olefin Cyclopropanation

scientific article published on 12 October 2016

DASP3: identification of protein sequences belonging to functionally relevant groups

scientific article

Deletions and replacements of omega loops in yeast iso-1-cytochrome c

scientific article

Disease progression and phasic changes in gene expression in a mouse model of osteoarthritis

scientific article

Dynamics of dendritic cell maturation are identified through a novel filtering strategy applied to biological time-course microarray replicates

scientific article

EPR-detected folding kinetics of externally located cysteine-directed spin-labeled mutants of iso-1-cytochrome c.

scientific article published in December 2001

Electrostatics of cysteine residues in proteins: parameterization and validation of a simple model.

scientific article

Enhanced functional annotation of protein sequences via the use of structural descriptors

scientific article

Fluorescent and affinity-based tools to detect cysteine sulfenic acid formation in proteins

scientific article

From fold predictions to function predictions: automation of functional site conservation analysis for functional genome predictions

scientific article published on May 1999

Function driven protein evolution. A possible proto-protein for the RNA-binding proteins ⬇️

scientific article published on January 1, 1998

Function first: a powerful approach to post-genomic drug discovery

scientific article

Functional analysis of the Escherichia coli genome for members of the alpha/beta hydrolase family

scientific article published on January 1998

Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity

scientific article published in October 1998

Functional site profiling and electrostatic analysis of cysteines modifiable to cysteine sulfenic acid.

scientific article

Genomic-scale comparison of sequence- and structure-based methods of function prediction: does structure provide additional insight?

scientific article published on May 2001

Hydrogen exchange behavior of [U-15N]-labeled oxidized and reduced iso-1-cytochrome c.

scientific article

Identification of transcriptional and receptor networks that control root responses to ethylene.

scientific article published on 19 December 2017

Impact of the Type I Interferon Receptor on the Global Gene Expression Program During the Course of Dendritic Cell Maturation Induced by Polyinosinic Polycytidylic Acid

scientific article published on April 2016

Insights into correlated motions and long-range interactions in CheY derived from molecular dynamics simulations

scientific article published on 15 December 2006

Integration of gene expression data with network-based analysis to identify signaling and metabolic pathways regulated during the development of osteoarthritis

scientific article

Isofunctional Clustering and Conformational Analysis of the Arsenate Reductase Superfamily Reveals Nine Distinct Clusters

scientific article published on 02 November 2020

Loop Replacement and Random Mutagenesis of -Loop D, Residues 7084, in Iso-1-cytochromec

scientific article published in Journal of Biological Chemistry

Metabolic pathways are affected differently in Saccharomyces cerevisiae thiol peroxidase mutants during redox stress with hydrogen peroxide

scientific article published on 19 September 2011

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases

scientific article

Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice

scientific article published on March 2012

Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice.

scientific article published on 11 October 2010

Mutagenesis of histidine 26 demonstrates the importance of loop‐loop and loop‐protein interactions for the function of iso‐1‐cytochrome c ⬇️

scientific article published on April 1, 1998

Mutating a Highly Conserved Residue in Diverse Cytochrome P450s Facilitates Diastereoselective Olefin Cyclopropanation

scientific article published on 22 December 2015

Mutations in alpha-helical solvent-exposed sites of eglin c have long-range effects: evidence from molecular dynamics simulations

scientific article

New computational approaches to understanding molecular protein function

scientific article published on 5 April 2018

New programs for protein tertiary structure prediction

scientific article published on April 1993

Omega loops: nonregular secondary structures significant in protein function and stability

scientific article

PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family

scientific article

Prediction and evaluation of side-chain conformations for protein backbone structures

scientific article published on November 1996

Prediction of deleterious functional effects of amino acid mutations using a library of structure-based function descriptors

scientific article

Rose is a rose is a rose. Especially if you're a George

scientific article published in May 2006

SC²ATmd: a tool for integration of the figure of merit with cluster analysis for gene expression data

scientific article

Scientific software development is not an oxymoron

scientific article

Sequence- and structure-based protein function prediction from genomic information.

scientific article

Structural and electrostatic asymmetry at the active site in typical and atypical peroxiredoxin dimers.

scientific article published on 4 April 2012

Structural genomics and its importance for gene function analysis.

scientific article

Structure, Function, and Temperature Sensitivity of Directed, Random Mutants at Proline 76 and Glycine 77 in Ω-Loop D of Yeast Iso-1-cytochromec†

scientific article published on 01 February 1998

Structure-based Active Site Profiles for Genome Analysis and Functional Family Subclassification

article

Structure-based functional motif identifies a potential disulfide oxidoreductase active site in the serine/threonine protein phosphatase-1 subfamily

scientific article published on October 1999

Synergistic computational and experimental proteomics approaches for more accurate detection of active serine hydrolases in yeast

scientific article

The protein folding problem: a biophysical enigma.

scientific article

The requirement of reversible cysteine sulfenic acid formation for T cell activation and function.

scientific article

Using information theory to discover side chain rotamer classes: analysis of the effects of local backbone structure.

scientific article

Using molecular dynamics to map interaction networks in an aminoacyl-tRNA synthetase.

scientific article published in August 2007

List of works by Jacquelyn S Fetrow

1H, 13C and 15N resonance assignments and secondary structure of the human protein tyrosine phosphatase, PRL-2.

A kinetic analysis of the auxin transcriptome reveals cell wall remodeling proteins that modulate lateral root development in Arabidopsis

A method of directed random mutagenesis of the yeast chromosome shows that the iso-1-cytochrome c heme ligand His18 is essential

A proposed structural model of domain 1 of fasciclin III neural cell adhesion protein based on an inverse folding algorithm

Active site profiling to identify protein functional sites in sequences and structures using the Deacon Active Site Profiler (DASP).

Algebraic dependency models of protein signal transduction networks from time-series data.

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.

An approach to functionally relevant clustering of the protein universe: Active site profile-based clustering of protein structures and sequences

Analysis of the peroxiredoxin family: using active-site structure and sequence information for global classification and residue analysis

Analysis of the structure and stability of omega loop A replacements in yeast iso-1-cytochrome c.

Assignment of15N Chemical Shifts and15N Relaxation Measurements for Oxidized and Reduced Iso-1-cytochromec†

Automatic derivation of substructures yields novel structural building blocks in globular proteins.

Boundary distinction interpretation of microarray data via discrete correlate summation.

Broad phenotypic changes associated with gain of radiation resistance in head and neck squamous cell cancer

Chemical and Structural Diversity in Cyclooxygenase Protein Active Sites

Comparison of Co-Temporal Modeling Algorithms on Sparse Experimental Time Series Data Sets

Comparison of topological clustering within protein networks using edge metrics that evaluate full sequence, full structure, and active site microenvironment similarity

Conformational and oligomeric effects on the cysteine pK(a) of tryparedoxin peroxidase

Continuous cotemporal probabilistic modeling of systems biology networks from sparse data

Corrigendum: Mutating a Highly Conserved Residue in Diverse Cytochrome P450s Facilitates Diastereoselective Olefin Cyclopropanation

DASP3: identification of protein sequences belonging to functionally relevant groups

Deletions and replacements of omega loops in yeast iso-1-cytochrome c

Disease progression and phasic changes in gene expression in a mouse model of osteoarthritis

Dynamics of dendritic cell maturation are identified through a novel filtering strategy applied to biological time-course microarray replicates

EPR-detected folding kinetics of externally located cysteine-directed spin-labeled mutants of iso-1-cytochrome c.

Electrostatics of cysteine residues in proteins: parameterization and validation of a simple model.

Enhanced functional annotation of protein sequences via the use of structural descriptors

Fluorescent and affinity-based tools to detect cysteine sulfenic acid formation in proteins

From fold predictions to function predictions: automation of functional site conservation analysis for functional genome predictions

Function driven protein evolution. A possible proto-protein for the RNA-binding proteins ⬇️

Function first: a powerful approach to post-genomic drug discovery

Functional analysis of the Escherichia coli genome for members of the alpha/beta hydrolase family

Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity

Functional site profiling and electrostatic analysis of cysteines modifiable to cysteine sulfenic acid.

Genomic-scale comparison of sequence- and structure-based methods of function prediction: does structure provide additional insight?

Hydrogen exchange behavior of [U-15N]-labeled oxidized and reduced iso-1-cytochrome c.

Identification of transcriptional and receptor networks that control root responses to ethylene.

Impact of the Type I Interferon Receptor on the Global Gene Expression Program During the Course of Dendritic Cell Maturation Induced by Polyinosinic Polycytidylic Acid

Insights into correlated motions and long-range interactions in CheY derived from molecular dynamics simulations

Integration of gene expression data with network-based analysis to identify signaling and metabolic pathways regulated during the development of osteoarthritis

Isofunctional Clustering and Conformational Analysis of the Arsenate Reductase Superfamily Reveals Nine Distinct Clusters

Loop Replacement and Random Mutagenesis of -Loop D, Residues 7084, in Iso-1-cytochromec

Metabolic pathways are affected differently in Saccharomyces cerevisiae thiol peroxidase mutants during redox stress with hydrogen peroxide

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases

Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice

Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice.

Mutagenesis of histidine 26 demonstrates the importance of loop‐loop and loop‐protein interactions for the function of iso‐1‐cytochrome c ⬇️

Mutating a Highly Conserved Residue in Diverse Cytochrome P450s Facilitates Diastereoselective Olefin Cyclopropanation

Mutations in alpha-helical solvent-exposed sites of eglin c have long-range effects: evidence from molecular dynamics simulations

New computational approaches to understanding molecular protein function

New programs for protein tertiary structure prediction

Omega loops: nonregular secondary structures significant in protein function and stability

PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family

Prediction and evaluation of side-chain conformations for protein backbone structures

Prediction of deleterious functional effects of amino acid mutations using a library of structure-based function descriptors

Rose is a rose is a rose. Especially if you're a George

SC²ATmd: a tool for integration of the figure of merit with cluster analysis for gene expression data

Scientific software development is not an oxymoron

Sequence- and structure-based protein function prediction from genomic information.

Structural and electrostatic asymmetry at the active site in typical and atypical peroxiredoxin dimers.

Structural genomics and its importance for gene function analysis.

Structure, Function, and Temperature Sensitivity of Directed, Random Mutants at Proline 76 and Glycine 77 in Ω-Loop D of Yeast Iso-1-cytochromec†

Structure-based Active Site Profiles for Genome Analysis and Functional Family Subclassification

Structure-based functional motif identifies a potential disulfide oxidoreductase active site in the serine/threonine protein phosphatase-1 subfamily

Synergistic computational and experimental proteomics approaches for more accurate detection of active serine hydrolases in yeast

The protein folding problem: a biophysical enigma.

The requirement of reversible cysteine sulfenic acid formation for T cell activation and function.

Using information theory to discover side chain rotamer classes: analysis of the effects of local backbone structure.

Using molecular dynamics to map interaction networks in an aminoacyl-tRNA synthetase.