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List of works by Jean-Marc Schwartz

A MAPK-Driven Feedback Loop Suppresses Rac Activity to Promote RhoA-Driven Cancer Cell Invasion

scientific article

A global view of drug-therapy interactions

scientific article

A logical model of HIV-1 interactions with the T-cell activation signalling pathway

scientific article published on 26 November 2014

A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes

scientific article published in September 2005

A quantitative brain map of experimental cerebral malaria pathology

scientific article

Calcium activated nucleotidase 1 (CANT1) is critical for glycosaminoglycan biosynthesis in cartilage and endochondral ossification

scientific article published on 12 November 2018

Combinatorial mathematical modelling approaches to interrogate rear retraction dynamics in 3D cell migration

scientific article published in 2021

Comprehensive modelling of the Neurospora circadian clock and its temperature compensation

scientific article

Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events

scientific article published on 9 December 2015

Construction of a genome-scale kinetic model of mycobacterium tuberculosis using generic rate equations

scientific article published on 3 July 2012

Cyclic decomposition explains a photosynthetic down regulation for Chlamydomonas reinhardtii

scientific article published on 29 September 2017

Cytokinesis mediated through the recruitment of cortexillins into the cleavage furrow

scientific article

Deterministic mathematical models of the cAMP pathway in Saccharomyces cerevisiae

scientific article published in 2009

Differential regulation of cell death pathways by the microenvironment correlates with chemoresistance and survival in leukaemia

scientific article

Disentangling the multigenic and pleiotropic nature of molecular function

scientific article published on 9 December 2015

Dynamics of DNA damage induced pathways to cancer

scientific article

Effect of IAPP on the proteome of cultured Rin-5F cells

scholarly article by Samaneh Miraee-Nedjad published in November 2018

Environmental systems biology of cold-tolerant phenotype in Saccharomyces species adapted to grow at different temperatures

scientific article published on November 2014

Erg and AP-1 as determinants of glucocorticoid response in acute lymphoblastic leukemia

scientific article

Exploring the genetic control of glycolytic oscillations in Saccharomyces cerevisiae

scientific article

Flux balance analysis reveals acetate metabolism modulates cyclic electron flow and alternative glycolytic pathways in Chlamydomonas reinhardtii

scientific article

Flux sampling is a powerful tool to study metabolism under changing environmental conditions

scientific article published on 02 September 2019

From empirical to theoretical models of light response curves - linking photosynthetic and metabolic acclimation

scientific article published on 25 October 2019

G protein beta subunit-null mutants are impaired in phagocytosis and chemotaxis due to inappropriate regulation of the actin cytoskeleton

scientific article

Gene expression changes in damaged osteoarthritic cartilage identify a signature of non-chondrogenic and mechanical responses

scientific article published on 10 March 2016

Genome-scale integrative data analysis and modeling of dynamic processes in yeast

scientific article

Golvesin-GFP fusions as distinct markers for Golgi and post-Golgi vesicles in Dictyostelium cells

scientific article published in October 2000

HybridMine: A Pipeline for Allele Inheritance and Gene Copy Number Prediction in Hybrid Genomes and Its Application to Industrial Yeasts

scientific article published on 09 October 2020

Identification of metabolic units induced by environmental signals

scientific article published in July 2006

Insight into glucocorticoid receptor signalling through interactome model analysis.

scientific article published on 6 November 2017

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks

scientific article

Kinetic Modeling of DUSP Regulation in Herceptin-Resistant HER2-Positive Breast Cancer

scientific article published on 26 July 2019

Local and global modes of drug action in biochemical networks

scientific article

MODELING TECHNIQUES FOR LIVER TISSUE PROPERTIES AND THEIR APPLICATION IN SURGICAL TREATMENT OF LIVER CANCER

Mapping biological process relationships and disease perturbations within a pathway network.

scientific article

Membrane Tension Orchestrates Rear Retraction in Matrix-Directed Cell Migration

scientific article published on 10 October 2019

Metabolic acclimation - a key to enhancing photosynthesis in changing environments?

scientific article published on 05 April 2019

Metabolic flux prediction in cancer cells with altered substrate uptake

scientific article

Microfilament dynamics during cell movement and chemotaxis monitored using a GFP–actin fusion protein ⬇️

scientific article published on 01 March 1997

Modeling the Mechanism of GR/c-Jun/Erg Crosstalk in Apoptosis of Acute Lymphoblastic Leukemia

scientific article published on 19 November 2012

Modelling GTPase dynamics to understand RhoA-driven cancer cell invasion

scientific article

Modelling liver tissue properties using a non-linear visco-elastic model for surgery simulation

scientific article published on 2 December 2004

Modelling the role of dual specificity phosphatases in herceptin resistant breast cancer cell lines

scientific article published on 25 March 2019

Modularity in protein complex and drug interactions reveals new polypharmacological properties

scientific article

Molecular profiling of thyroid cancer subtypes using large-scale text mining

scientific article

Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems

scientific article published in Scientific Reports

Network medicine analysis of chondrocyte proteins towards new treatments of osteoarthritis.

scientific article published on 15 January 2014

Non-linear Soft Tissue Deformations for the Simulation of Percutaneous Surgeries

Observing metabolic functions at the genome scale

scientific article published on January 2007

Organising metabolic networks: Cycles in flux distributions

scientific article published on 6 May 2010

PathNER: a tool for systematic identification of biological pathway mentions in the literature

scientific article published on 16 October 2013

PhenomeExpress: a refined network analysis of expression datasets by inclusion of known disease phenotypes

scientific article

PhenomeScape: a cytoscape app to identify differentially regulated sub-networks using known disease associations.

scientific article

Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues.

scientific article

Quantitative analysis and modeling of glucocorticoid-controlled gene expression

scientific article published on November 2010

Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis

scientific article

Quantitative proteomics and network analysis of SSA1 and SSB1 deletion mutants reveals robustness of chaperone HSP70 network in Saccharomyces cerevisiae

scientific article published on 16 February 2015

Rationalizing Rac1 and RhoA GTPase signaling: A mathematical approach

scientific article

Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis

scientific article published on 11 April 2018

SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data

scientific article published on 01 July 2019

Stratification of knee osteoarthritis: two major patient subgroups identified by genome-wide expression analysis of articular cartilage.

scientific article published on 22 December 2017

Streamlining the construction of large-scale dynamic models using generic kinetic equations.

scientific article

The Expanded p53 Interactome as a Predictive Model for Cancer Therapy

The chaperone activity of 4PBA ameliorates the skeletal phenotype of Chihuahua, a zebrafish model for dominant osteogenesis imperfecta

scientific article published on 5 May 2017

The chloroplast genome of the marine microalga Tisochrysis lutea

Three-dimensional patterns and redistribution of myosin II and actin in mitotic Dictyostelium cells

scientific article published on December 1997

Transgenic inhibition of interleukin-6 trans-signaling does not prevent skeletal pathologies in mucolipidosis type II mice

scientific article published on 11 February 2021

Using Multilayer Heterogeneous Networks to Infer Functions of Phosphorylated Sites

scientific article published on 24 June 2021

Using network science to propose strategies for effectively dealing with pandemics: The COVID-19 example

scientific article published on 06 April 2020

Using set theory to reduce redundancy in pathway sets

scientific article published on 19 October 2018

Why COVID-19 models should incorporate the network of social interactions

scientific article published on 23 July 2020

XBP1 signalling is essential for alleviating mutant protein aggregation in ER-stress related skeletal disease

scientific article published on 01 July 2019

p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

article

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