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List of works by Terence Hwa

1/f alpha noise in dissipative transport

scientific article published on 01 January 1992

A Novel Method Distinguishes Between Mutation Rates and Fixation Biases in Patterns of Single-Nucleotide Substitution

article

A global resource allocation strategy governs growth transition kinetics of Escherichia coli

scientific article published on 25 October 2017

A growth-rate composition formula for the growth of E.coli on co-utilized carbon substrates.

scientific article published on 9 April 2015

A mechanobiochemical mechanism for monooriented chromosome oscillation in mitosis

scholarly article

A statistical theory of sequence alignment with gaps.

scientific article published in January 1998

A traveling-wave solution for bacterial chemotaxis with growth

scientific article published on 01 November 2021

A universal trade-off between growth and lag in fluctuating environments

scientific article published on 15 July 2020

An evolutionarily stable strategy to colonize spatially extended habitats

scientific article published on 06 November 2019

An integrated mechanobiochemical feedback mechanism describes chromosome motility from prometaphase to anaphase in mitosis

scholarly article

Analytical study of the effect of recombination on evolution via DNA shuffling

scientific article published on 24 May 2004

Anomalous fluctuations of directed polymers in random media

scientific article published on 01 February 1994

Avalanches, hydrodynamics, and discharge events in models of sandpiles

article

Bacterial growth laws and their applications

scientific article

Bacterial growth, flow, and mixing shape human gut microbiota density and composition.

scientific article published on 13 March 2018

Bacterial growth: global effects on gene expression, growth feedback and proteome partition

scientific article published on 02 February 2014

Burgers equation with correlated noise: Renormalization-group analysis and applications to directed polymers and interface growth.

scientific article published in March 1989

Cellular perception of growth rate and the mechanistic origin of bacterial growth law

scientific article published in 2022

Chemotaxis as a navigation strategy to boost range expansion

scientific article published on 06 November 2019

Co-evolving motions at protein-protein interfaces of two-component signaling systems identified by covariance analysis.

scientific article

Coevolutionary signals across protein lineages help capture multiple protein conformations.

scientific article

Combinatorial transcriptional control of the lactose operon of Escherichia coli

scholarly article

Comment on "Random disorder in a model vortex liquid"

Computational modeling of phosphotransfer complexes in two-component signaling

scientific article published on March 2010

Conformation of graphite oxide membranes in solution

scientific article published on 01 August 1991

Constrained Allocation Flux Balance Analysis ⬇️

scientific article

Coordination of bacterial proteome with metabolism by cyclic AMP signalling.

scientific article published on 7 August 2013

Correction: Quantitative Characteristics of Gene Regulation by Small RNA.

scientific article published on 29 January 2008

Crumpled and collapsed conformation in graphite oxide membranes

scientific article published in Nature

DNA sequence evolution with neighbor-dependent mutation.

scientific article

Designing sequential transcription logic: a simple genetic circuit for conditional memory

scientific article published on April 2007

Deterministic characterization of stochastic genetic circuits

scholarly article

Direct coupling analysis for protein contact prediction.

scientific article

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

scientific article

Disorder-induced depinning transition

scientific article published on 01 January 1995

Disruption of transcription-translation coordination in Escherichia coli leads to premature transcriptional termination

scientific article published on 26 August 2019

Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks

scientific article published in 2011

Dissipative transport in open systems: An investigation of self-organized criticality.

scientific article

Distinct changes of genomic biases in nucleotide substitution at the time of Mammalian radiation.

scientific article published on 28 July 2003

Dynamic and static properties of the randomly pinned planar flux array

scientific article published on 01 June 1994

Dynamics of competitive evolution on a smooth landscape

scientific article published in Physical Review Letters

Editorial overview: Current Opinion in Microbiology 2018 Special issue 'Microbial systems biology, vol. 45'

scientific article published on 17 October 2018

Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel

scientific article published on 28 September 2016

Effect of water flow and chemical environment on microbiota growth and composition in the human colon.

scientific article published on 06 June 2017

Emergence of robust growth laws from optimal regulation of ribosome synthesis

scientific article

Evolution of Surface Patterns on Swelling Gels

scientific article published in Physical Review Letters

Evolutionary selection between alternative modes of gene regulation

scholarly article

Exact scaling function of interface growth dynamics

scientific article published on 01 December 1991

Expression patterns of cell-type-specific genes in Dictyostelium.

scientific article

Extracting transcriptional events from temporal gene expression patterns during Dictyostelium development.

scientific article

Features of protein-protein interactions in two-component signaling deduced from genomic libraries

scientific article

Fluctuations of a nonequililbrium interface.

scientific article

Flux pinning and forced vortex entanglement by splayed columnar defects

scientific article published on 01 November 1993

Flux-line pinning by competing disorders

scientific article published on 01 July 1993

Force-induced denaturation of RNA

scientific article

From vortices to genomics

scientific article published in Nature

Gene length may contribute to graded transcriptional responses in the Drosophila embryo

scientific article published on 3 September 2011

General quantitative relations linking cell growth and the cell cycle in Escherichia coli

scientific article published on 18 May 2020

Generalized epsilon expansion for self-avoiding tethered manifolds

scientific article published on 01 February 1990

Genomics-aided structure prediction

scientific article

Growth rate-dependent global effects on gene expression in bacteria

scientific article published on December 2009

Growth-induced roughening of crystalline facets

scientific article published in Physical Review Letters

Growth-rate-dependent partitioning of RNA polymerases in bacteria

scholarly article

High-resolution protein complexes from integrating genomic information with molecular simulation

scientific article

Hwa, Kardar, and Paczuski reply

scientific article published in Physical Review Letters

Hybrid alignment: high-performance with universal statistics.

scientific article published in June 2002

Identification and measurement of neighbor-dependent nucleotide substitution processes.

scientific article published on 15 March 2005

Identification of direct residue contacts in protein-protein interaction by message passing

scientific article (publication date: 30 December 2008)

Inference of direct residue contacts in two-component signaling

scientific article

Inflating bacterial cells by increased protein synthesis.

scientific article published on 30 October 2015

Interacting Arrays of Lines and Steps in Random Media

scientific article published on 01 November 1996

Interdependence of cell growth and gene expression: origins and consequences.

scientific article

Localization of denaturation bubbles in random DNA sequences

scientific article

Mechanically probing the folding pathway of single RNA molecules

scientific article

Mode-coupling and renormalization group results for the noisy Burgers equation.

scientific article published in May 1996

Molecular crowding limits translation and cell growth

scientific article published on 30 September 2013

Need-based activation of ammonium uptake in Escherichia coli

scientific article published on January 2012

Nonequilibrium dynamics of driven line liquids

scientific article published on 01 September 1992

Nonlinear protein degradation and the function of genetic circuits

scientific article

On ribosome load, codon bias and protein abundance.

scientific article

On schemes of combinatorial transcription logic

scientific article

On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient.

scientific article

On the selection and evolution of regulatory DNA motifs

scientific article

Optimizing Smith-Waterman alignments

scientific article published on January 1999

Overcoming fluctuation and leakage problems in the quantification of intracellular 2-oxoglutarate levels in Escherichia coli

scientific article published on 05 August 2011

Overflow metabolism in Escherichia coli results from efficient proteome allocation.

scientific article published on December 2015

Percolation clustering: a novel approach to the clustering of gene expression patterns in Dictyostelium development

scientific article

Physical constraints and functional characteristics of transcription factor-DNA interaction.

scientific article

Predicting the spatiotemporal dynamics of hair follicle patterns in the developing mouse

scientific article

Quantifying the benefit of a proteome reserve in fluctuating environments

scientific article published on 31 October 2017

Quantifying the sequence-function relation in gene silencing by bacterial small RNAs

scientific article (publication date: 26 July 2011)

Quantitative characteristics of gene regulation by small RNA

scientific article

Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria

scientific article

Rapid assessment of extremal statistics for gapped local alignment

scientific article published on January 1999

Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth.

scientific article published on 12 December 2016

Regional and time-resolved mutation patterns of the human genome.

scientific article published in July 2004

Regulation underlying hierarchical and simultaneous utilization of carbon substrates by flux sensors in Escherichia coli

scientific article published on 09 December 2019

Reversible adenylylation of glutamine synthetase is dynamically counterbalanced during steady-state growth of Escherichia coli

scientific article published on 29 September 2010

Scaling laws and similarity detection in sequence alignment with gaps.

scientific article published in February 2000

Self-avoiding crumpled manifolds: Perturbative analysis and renormalizability

scientific article published in Physical Review Letters

Sequential establishment of stripe patterns in an expanding cell population

scientific article

Similarity detection and localization

scientific article published on 01 April 1996

Slowdown of Translational Elongation in Escherichia coli under Hyperosmotic Stress

scientific article published on 13 February 2018

Small RNAs establish gene expression thresholds

scientific article

Sources and sinks: a stochastic model of evolution in heterogeneous environments.

scientific article published on 8 December 2010

Spatiotemporal establishment of dense bacterial colonies growing on hard agar

scientific article published on 11 March 2019

Speed, sensitivity, and bistability in auto-activating signaling circuits

scientific article

Statistical mechanics of secondary structures formed by random RNA sequences.

scientific article published on 11 February 2002

Statistical significance of probabilistic sequence alignment and related local hidden Markov models.

scientific article published in January 2001

Stochastic fluctuations in metabolic pathways

scholarly article

Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination

scholarly article

Stripe formation in bacterial systems with density-suppressed motility

scientific article published on 08 May 2012

Suboptimal resource allocation in changing environments constrains response and growth in bacteria

scientific article published on 20 December 2021

Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects.

scientific article published on 31 May 2005

The estimation of statistical parameters for local alignment score distributions.

scientific article

The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria

scientific article

Traffic patrol in the transcription of ribosomal RNA.

scientific article published on 07 September 2009

Transcriptional regulation by the numbers: applications

scientific article

Transcriptional regulation by the numbers: models.

scientific article

Translocation of structured polynucleotides through nanopores

scientific article

Tribology of Sliding Elastic Media

scientific article published on 01 July 1996

Vortex glass phase and universal susceptibility variations in planar arrays of flux lines

scientific article published on 01 April 1994

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