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List of works by Margaret F Romine

A novel interferon-inducible domain: structural and functional analysis of the human interferon regulatory factor 1 gene promoter

scientific article published on January 1993

AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis.

scientific article published on January 2006

Aromatic-degrading Sphingomonas isolates from the deep subsurface

scientific article

Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.

scientific article published on 30 September 2013

Characterization of Purifiedc-Type Heme-Containing Peptides and Identification ofc-Type Heme-Attachment Sites inShewanellaoneidenisCytochromes Using Mass Spectrometry

scientific article published on 01 May 2005

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

scientific article

Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis

scientific article published on 20 July 2006

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

scientific article

Comparative systems biology across an evolutionary gradient within the Shewanella genus.

scientific article published in September 2009

Comparisons of Shewanella strains based on genome annotations, modeling, and experiments

scientific article

Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.

scientific article

Conservation of transcription start sites within genes across a bacterial genus

scientific article

Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes

scientific article

Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation

scientific article

Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis.

scientific article

Correlated atomic force microscopy and fluorescence lifetime imaging of live bacterial cells

scientific article

Current Production and Metal Oxide Reduction by Shewanella oneidensis MR-1 Wild Type and Mutants.

scientific article

Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants

scientific article

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

scientific article

Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous 'streamer' community

scientific article

Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms

scholarly article

Electrokinesis is a microbial behavior that requires extracellular electron transport

scientific article

Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics

scientific article published on 19 January 2011

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1.

scientific article

Formaldehyde as a carbon and electron shuttle between autotroph and heterotroph populations in acidic hydrothermal vents of Norris Geyser Basin, Yellowstone National Park

scientific article published on 19 March 2016

Functional roles of CymA and NapC in reduction of nitrate and nitrite by Shewanella putrefaciens W3-18-1.

scientific article

Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a

scientific article published on 30 January 2014

Genome-assisted analysis of dissimilatory metal-reducing bacteria

scientific article

Genome-wide protein localization prediction strategies for gram negative bacteria ⬇️

scientific article published on June 15, 2011

Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum.

scientific article

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

scientific article

Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization

scholarly article

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

scientific article (publication date: March 2013)

Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the hanford site, washington state

scientific article

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

scientific article

Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics

scientific article published in August 2005

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

scientific article

Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors

scientific article

Halomonas campisalis sp. nov., a denitrifying, moderately haloalkaliphilic bacterium

scientific article

Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains

scientific article

Human interferon regulatory factor 1: intron-exon organization

scientific article (publication date: October 1992)

Hydrogenase- and outer membrane c-type cytochrome-facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1.

scientific article published on 18 September 2007

Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia

scientific article published on 23 October 2015

Identification and analysis of a highly conserved chemotaxis gene cluster in Shewanella species

scientific article published on 21 June 2007

Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling.

scientific article published in January 2007

Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome

scientific article published on 31 March 2008

Identification of nicotinamide mononucleotide deamidase of the bacterial pyridine nucleotide cycle reveals a novel broadly conserved amidohydrolase family

scientific article published on 27 September 2011

Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration

scientific article published on July 2010

Induction of aromatic catabolic activity in Sphingomonas aromaticivorans strain F199.

scientific article

Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing

scientific article published on 29 April 2014

Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilms

scientific article published on 29 February 2008

Live Cell Discovery of Microbial Vitamin Transport and Enzyme-Cofactor Interactions

scientific article published on 15 December 2015

Live cell chemical profiling of temporal redox dynamics in a photoautotrophic cyanobacterium

scientific article published on 6 November 2013

Mapping the subcellular proteome of Shewanella oneidensis MR-1 using sarkosyl-based fractionation and LC-MS/MS protein identification

scientific article

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

scientific article published in 2021

Microbial genomics: the floodgates open

scientific article

Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142

scientific article

N-terminal protein processing: a comparative proteogenomic analysis

scientific article published on 23 September 2012

Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1.

scientific article published on 10 April 2008

Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199.

scientific article published on August 1995

Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park

scientific article

Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling.

scientific article

Recruitment and expression of toluene/trichloroethylene biodegradation genes in bacteria native to deep-subsurface sediments

scientific article

Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA.

scientific article published on 23 April 2009

Role of outer membrane c-type cytochromes MtrC and OmcA in Shewanella oneidensis MR-1 cell production, accumulation, and detachment during respiration on hematite

scientific article published on 23 February 2012

SENTRA, a database of signal transduction proteins

scientific article

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions

scientific article

Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components

scientific article

Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.

scientific article

Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov.

scientific article

The octahaem SirA catalyses dissimilatory sulfite reduction in Shewanella oneidensis MR-1

scientific journal article

Towards environmental systems biology of Shewanella

scientific article published on 07 July 2008

Trichloroethene reductive dehalogenase from Dehalococcoides ethenogenes: sequence of tceA and substrate range characterization

scientific article

Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth

scientific article published on 26 July 2016

Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction

scientific article

Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis

scientific article

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

scientific article

c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis

scientific article

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