List of works - Jeffrey S. McLean

Acquisition of the arginine deiminase system benefits epiparasitic Saccharibacteria and their host bacteria in a mammalian niche environment

scientific article published in 2022

Advancements toward a systems level understanding of the human oral microbiome

scientific article

An estimate of biofilm properties using an acoustic microscope

scientific article

An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome

scientific article published on 02 October 2013

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

scientific article

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

scientific article

Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy

scientific article

Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

scientific article

Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on matrix assisted laser desorption/ionization whole cell protein fingerprints.

scientific article published in September 2005

Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms

scholarly article

Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments.

scientific article

Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

scientific article published on 5 April 2013

Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniques

scientific article

In situ effective diffusion coefficient profiles in live biofilms using pulsed-field gradient nuclear magnetic resonance

scientific article

Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilms

scientific article published on 29 February 2008

Isolation and characterization of a chromium-reducing bacterium from a chromated copper arsenate-contaminated site

scientific article published on 01 December 2000

Isolation and genome analysis of single virions using 'single virus genomics'.

scientific article published on 26 May 2013

Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism

scientific article published on 29 May 2015

Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules

scientific article

Metagenome and Metatranscriptome Analyses Using Protein Family Profiles

scientific article

NMR bioreactor development for live in-situ microbial functional analysis

scientific article

NMR methods for in situ biofilm metabolism studies

scientific article published in September 2005

Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1.

scientific article published on 10 April 2008

Preparation and evaluation of spore-specific affinity-augmented bio-imprinted beads

scientific article published on 25 July 2006

Quantification of electron transfer rates to a solid phase electron acceptor through the stages of biofilm formation from single cells to multicellular communities.

scientific article published in April 2010

Rapamycin rejuvenates oral health in aging mice

scientific article published on 28 April 2020

Recent advances in genomic DNA sequencing of microbial species from single cells

scientific article

Role of outer-membrane cytochromes MtrC and OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR-1.

scientific article published on 25 November 2009

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

scientific article (publication date: 9 August 2016)

Single cell genomics of bacterial pathogens: outlook for infectious disease research

scientific article

Single virus genomics: a new tool for virus discovery

scientific article published in 2011

The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression

scientific article published on 21 November 2007

The saccharibacterium TM7x elicits differential responses across its host range

scientific article published on 24 August 2020

The social structure of microbial community involved in colonization resistance

scientific article published on 03 October 2013

Using DGGE profiling to develop a novel culture medium suitable for oral microbial communities

scientific article

Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction

scientific article

and emerge as lone survivors following long-term starvation of oral microbiota

scientific article published on 11 April 2019

c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis

scientific article

investigating acid production by Streptococcus mutans with a surface-displayed pH-sensitive green fluorescent protein

scientific article

List of works by Jeffrey S. McLean

Acquisition of the arginine deiminase system benefits epiparasitic Saccharibacteria and their host bacteria in a mammalian niche environment

Advancements toward a systems level understanding of the human oral microbiome

An estimate of biofilm properties using an acoustic microscope

An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy

Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on matrix assisted laser desorption/ionization whole cell protein fingerprints.

Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms

Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments.

Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniques

In situ effective diffusion coefficient profiles in live biofilms using pulsed-field gradient nuclear magnetic resonance

Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilms

Isolation and characterization of a chromium-reducing bacterium from a chromated copper arsenate-contaminated site

Isolation and genome analysis of single virions using 'single virus genomics'.

Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism

Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules

Metagenome and Metatranscriptome Analyses Using Protein Family Profiles

NMR bioreactor development for live in-situ microbial functional analysis

NMR methods for in situ biofilm metabolism studies

Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1.

Preparation and evaluation of spore-specific affinity-augmented bio-imprinted beads

Quantification of electron transfer rates to a solid phase electron acceptor through the stages of biofilm formation from single cells to multicellular communities.

Rapamycin rejuvenates oral health in aging mice

Recent advances in genomic DNA sequencing of microbial species from single cells

Role of outer-membrane cytochromes MtrC and OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR-1.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Single cell genomics of bacterial pathogens: outlook for infectious disease research

Single virus genomics: a new tool for virus discovery

The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression

The saccharibacterium TM7x elicits differential responses across its host range

The social structure of microbial community involved in colonization resistance

Using DGGE profiling to develop a novel culture medium suitable for oral microbial communities

Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction

and emerge as lone survivors following long-term starvation of oral microbiota

c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis

investigating acid production by Streptococcus mutans with a surface-displayed pH-sensitive green fluorescent protein