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List of works by Arjun Raj

Allele-specific RNA imaging shows that allelic imbalances can arise in tissues through transcriptional bursting

scientific article published on 09 January 2019

ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification

scientific article published on 12 November 2018

Control of somatic tissue differentiation by the long non-coding RNA TINCR.

scientific article published on 2 December 2012

Dynamic enhancer-gene body contacts during transcription elongation

scientific article

Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping

scientific article published on 05 April 2016

FISHing Out the Details of CRISPR Genome Tracks

scientific article published in March 2017

Gene regulation gravitates towards either addition or multiplication when combining the effects of two signals

scientific article published on 07 December 2020

Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification

scientific article published on 17 July 2013

Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer

scientific article

Genetic screening for single-cell variability modulators driving therapy resistance

scientific article published on 04 January 2021

Global analysis of RNA secondary structure in two metazoans.

scientific article published on 26 January 2012

Half dozen of one, six billion of the other: What can small- and large-scale molecular systems biology learn from one another?

scientific article

Heterogeneous lineage marker expression in naive embryonic stem cells is mostly due to spontaneous differentiation

scientific article published on 21 August 2015

Identification of a Natural Viral RNA Motif That Optimizes Sensing of Viral RNA by RIG-I.

scientific article

Imaging Single mRNA Molecules in Yeast

scientific article published on 01 March 2010

Imaging individual mRNA molecules using multiple singly labeled probes

scientific article

Inhibition of intestinal tumor formation by deletion of the DNA methyltransferase 3a.

scientific article

LADL: light-activated dynamic looping for endogenous gene expression control

scientific article published on 24 June 2019

LincRNA-p21 activates p21 in cis to promote Polycomb target gene expression and to enforce the G1/S checkpoint

scientific article published on 22 May 2014

Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development

scientific article published on 04 February 2014

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution

scientific article

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

scientific article

Mechanism of mRNA transport in the nucleus

scientific article

Mitotic transcription and waves of gene reactivation during mitotic exit

scientific article published on 14 September 2017

Molecular memoirs of a cellular family

scientific article published in Nature

Multiplexed detection of viral infections using rapid in situ RNA analysis on a chip

scientific article

Nanoscale imaging of RNA with expansion microscopy

scientific article published on 04 July 2016

Neutrophils and Ly6Chi monocytes collaborate in generating an optimal cytokine response that protects against pulmonary Legionella pneumophila infection

scientific article

Noise in gene expression determines cell fate in Bacillus subtilis

scientific article

Nup98 promotes antiviral gene expression to restrict RNA viral infection in Drosophila

scientific article

Overlapping cell population expression profiling and regulatory inference in C. elegans

scientific article

Quanti.us: a tool for rapid, flexible, crowd-based annotation of images

scientific article published on 31 July 2018

Quantitative assessment of ratiometric bimolecular beacons as a tool for imaging single engineered RNA transcripts and measuring gene expression in living cells

scientific article

RNA sequencing in situ

scientific article published on 01 June 2014

Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance

scientific article published on 7 June 2017

Remodeling of the collagen matrix in aging skin promotes melanoma metastasis and affects immune cell motility

scientific article published on 02 October 2018

Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue

scientific article

Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue

scientific article published on 01 November 2015

Single Molecule Imaging of RNA In Situ

article

Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms.

scientific article

Single-cell differences in matrix gene expression do not predict matrix deposition.

scientific article published on 3 March 2016

Single-chromosome transcriptional profiling reveals chromosomal gene expression regulation

scientific article published on 17 February 2013

Single-molecule approaches to stochastic gene expression

scientific article published on January 2009

Social reprogramming in ants induces longevity-associated glia remodeling

scientific article published on 19 August 2020

Spo0A~P imposes a temporal gate for the bimodal expression of competence in Bacillus subtilis.

scientific article

Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency

scientific article

Stochastic mRNA synthesis in mammalian cells

scientific article

The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries

scientific article published in April 2017

The Bicoid class homeodomain factors ceh-36/OTX and unc-30/PITX cooperate in C. elegans embryonic progenitor cells to regulate robust development

scientific article published on 4 March 2015

The influence of chromosome flexibility on chromosome transport during anaphase A.

scientific article

The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan.

scientific article published on 15 August 2016

Time-Lapse Transcription

scientific article

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

scientific article

Transcriptional Bursting Explains the Noise-Versus-Mean Relationship in mRNA and Protein Levels.

scientific article

Transcriptional burst initiation and polymerase pause release are key control points of transcriptional regulation

Tumor endothelial marker 1-specific DNA vaccination targets tumor vasculature.

scientific article published on 18 March 2014

Turbo FISH: a method for rapid single molecule RNA FISH.

scientific article

Variability in gene expression underlies incomplete penetrance

scientific article

Variability within rare cell states enables multiple paths toward drug resistance

scientific article published on 22 February 2021

Visualization of lncRNA by single-molecule fluorescence in situ hybridization

scientific article published on January 2015

Visualizing SNVs to quantify allele-specific expression in single cells

scientific article published on 04 August 2013

Visualizing allele-specific expression in single cells reveals epigenetic mosaicism in an H19 loss-of-imprinting mutant

scientific article published on March 2016

What's Luck Got to Do with It: Single Cells, Multiple Fates, and Biological Nondeterminism

scientific article published on June 2016

linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis

scientific journal article

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