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List of works by Jakub O Westholm

Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans

Building blocks are synthesized on demand during the yeast cell cycle

scientific article published on 25 March 2020

Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3

scientific article

Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family

scientific journal article

Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs

scientific article published on 21 December 2011

Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD

scientific article published on 17 August 2018

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans

scientific article

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

scientific article

Discovery of hundreds of mirtrons in mouse and human small RNA data

scientific article

Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines

scientific article

Endocan is a VEGF-A and PI3K regulated gene with increased expression in human renal cancer.

scientific article published on 6 February 2007

Expression profiling and in situ screening of circular RNAs in human tissues

scientific article published in Scientific Reports

Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation

scientific article

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation

scientific article

Genome-wide identification of Grainy head targets in Drosophila reveals regulatory interactions with the POU domain transcription factor Vvl.

scientific article published on 31 July 2017

Gis1 and Rph1 regulate glycerol and acetate metabolism in glucose depleted yeast cells

scientific article

Global gene expression analysis by combinatorial optimization

scientific article published in January 2004

Global patterns of tissue-specific alternative polyadenylation in Drosophila

scientific article

Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome

scientific article published in Scientific Reports

Histone modifications influence mediator interactions with chromatin

scientific article

Intertwined pathways for Argonaute-mediated microRNA biogenesis in Drosophila

scientific article

Massive and parallel expression profiling using microarrayed single-cell sequencing

scientific article published on 14 October 2016

Mirtrons: microRNA biogenesis via splicing

scientific article published on 21 June 2011

Neurophysiological defects and neuronal gene deregulation in Drosophila mir-124 mutants

scientific article

The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors

scientific article

Transcriptional profiling reveals a critical role for tyrosine phosphatase VE-PTP in regulation of VEGFR2 activity and endothelial cell morphogenesis

scientific article

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

scientific article

Vive la différence: biogenesis and evolution of microRNAs in plants and animals

scientific article

Widespread and extensive lengthening of 3' UTRs in the mammalian brain

scientific article published on 21 March 2013

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