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List of works by Paul D. Adams

A Droplet Microfluidic Platform for Automating Genetic Engineering

scientific article published on February 2016

A Versatile Microfluidic Device for Automating Synthetic Biology.

scientific article published on 15 June 2015

A bacterial pioneer produces cellulase complexes that persist through community succession.

scientific article

A dimerization motif for transmembrane α–helices

scientific article published on 01 March 1994

A droplet-to-digital (D2D) microfluidic device for single cell assays

scientific article published on January 2015

A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps

scientific article published on 30 October 2018

A microscale platform for integrated cell-free expression and activity screening of cellulases

scientific article

A new default restraint library for the protein backbone in Phenix: a conformation-dependent geometry goes mainstream

scientific article

A new generation of crystallographic validation tools for the protein data bank

scientific article

A peptide-based method for 13C Metabolic Flux Analysis in microbial communities

scientific article (publication date: September 2014)

A rapid and inexpensive labeling method for microarray gene expression analysis

scientific article

A rapid methods development workflow for high-throughput quantitative proteomic applications

article

A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection

scientific article (publication date: 18 April 2016)

A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins.

scientific article published on 7 September 2014

A universal flow cytometry assay for screening carbohydrate-active enzymes using glycan microspheres

scientific article published in June 2013

Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers

scientific article

Accurate model annotation of a near-atomic resolution cryo-EM map.

scientific article

Accurate prediction of protein structures and interactions using a three-track neural network

scientific article

Addition of a carbohydrate-binding module enhances cellulase penetration into cellulose substrates

scientific article published on 03 July 2013

Addressing the need for alternative transportation fuels: the Joint BioEnergy Institute

scientific article published in January 2008

Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems

scientific article published on 28 February 2013

Algorithms for deriving crystallographic space-group information. II. Treatment of special positions ⬇️

scientific article published on December 20, 2001

An atomic model of brome mosaic virus using direct electron detection and real-space optimization

scientific article

An editor for the generation and customization of geometry restraints.

scientific article published on February 2017

An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism

scientific article published on 10 June 2020

Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry.

scientific article

Analytics for Metabolic Engineering

scientific article

Annealing in crystallography: a powerful optimization tool

scientific article published on 01 January 1999

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

scientific article published on 08 April 2019

Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum

scientific article

Application of targeted proteomics to metabolically engineered Escherichia coli

scientific article published in April 2012

Arginine off-kilter: guanidinium is not as planar as restraints denote

scientific article published on 24 November 2020

Author Correction: Jungle Express is a versatile repressor system for tight transcriptional control

scientific article published in Nature Communications

Automated "Cells-To-Peptides" Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes

scientific article published on 30 August 2019

Automated crystallographic ligand building using the medial axis transform of an electron-density isosurface

scientific article published on 28 September 2005

Automated identification of elemental ions in macromolecular crystal structures

scientific article published on 20 March 2014

Automated ligand fitting by core-fragment fitting and extension into density

scientific article published on 18 July 2006

Automated map sharpening by maximization of detail and connectivity.

scientific article published on 18 May 2018

Automatic Fortran to C++ conversion with FABLE ⬇️

scientific article (publication date: 28 May 2012)

Automatic Solution of Heavy-Atom Substructures

scientific article published on 01 January 2003

Automatic multiple-zone rigid-body refinement with a large convergence radius

scientific article published on 16 July 2009

Automating crystallographic structure solution and refinement of protein-ligand complexes.

scientific article published on 25 December 2013

Averaged kick maps: less noise, more signal... and probably less bias

scientific article published on 06 August 2009

Berkeley Screen: a set of 96 solutions for general macromolecular crystallization.

scientific article published on 5 September 2017

Biochemical and Structural Studies of NADH-Dependent FabG Used To Increase the Bacterial Production of Fatty Acids under Anaerobic Conditions

scientific article

Biochemical characterization and crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima

scientific article

Blind image analysis for the compositional and structural characterization of plant cell walls

scientific article published on 18 July 2011

Bulk-solvent and overall scaling revisited: faster calculations, improved results

scientific article published on 14 March 2013

CERES: a cryo-EM re-refinement system for continuous improvement of deposited models

scientific article published on 01 January 2021

Can I solve my structure by SAD phasing? Anomalous signal in SAD phasing.

scientific article published on March 2016

Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal.

scientific article

Cellulosic biomass pretreatment and sugar yields as a function of biomass particle size

scientific article

Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow.

scientific article published on 19 May 2016

Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis.

scientific article

Comprehensive in Vitro Analysis of Acyltransferase Domain Exchanges in Modular Polyketide Synthases and Its Application for Short-Chain Ketone Production.

scientific article published on 22 August 2016

Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban

scientific article published on 01 February 1995

Conformation-dependent backbone geometry restraints set a new standard for protein crystallographic refinement.

scientific article

Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering

scientific article

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase

scientific article

Correlation analysis of targeted proteins and metabolites to assess and engineer microbial isopentenol production.

scientific article published in May 2014

Coupling of receptor conformation and ligand orientation determine graded activity

scientific article

Cryo-EM map interpretation and protein model-building using iterative map segmentation

scientific article published on 24 October 2019

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

scientific article published on 04 February 2021

Cryo_fit: Democratization of flexible fitting for cryo-EM

scientific article published on 03 July 2019

Crystal Structures of a Group II Chaperonin Reveal the Open and Closed States Associated with the Protein Folding Cycle

scientific article

Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications

scientific article

Crystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters

scientific article

Crystal structure of a bacterial ribonuclease P RNA.

scientific article

Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: structural insight into DNA binding and dimerization

scientific article published in July 2005

Crystal structure of the "PhoU-like" phosphate uptake regulator from Aquifex aeolicus

scientific article

Crystal structure of the transcriptional activator HlyU from Vibrio vulnificus CMCP6

scientific article

Crystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP

scientific article

Crystal structures of the Rhodococcus proteasome with and without its pro-peptides: implications for the role of the pro-peptide in proteasome assembly

scientific article

Crystallographic model quality at a glance

scientific article published on 20 February 2009

Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard

scientific article (publication date: June 2009)

Density modification of cryo-EM maps

scientific article published on 22 September 2020

Development of a native Escherichia coli induction system for ionic liquid tolerance

scientific article

DiSCaMB: a software library for aspherical atom model X-ray scattering factor calculations with CPUs and GPUs.

scientific article published in February 2018

Diffuse X-ray scattering to model protein motions

scientific article

Discovery of enzymes for toluene synthesis from anoxic microbial communities.

scientific article published on 19 March 2018

Droplet-based microfluidic platform for heterogeneous enzymatic assays

scientific article published in May 2013

EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.

scientific article

Efficient production of oxidized terpenoids via engineering fusion proteins of terpene synthase and cytochrome P450

scientific article published on 19 January 2021

Employing a biochemical protecting group for a sustainable indigo dyeing strategy.

scientific article published on 8 January 2018

Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme

scientific article

Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode

scientific article

Engineering dynamic pathway regulation using stress-response promoters.

scientific article

Enhancing fatty acid production by the expression of the regulatory transcription factor FadR.

scientific article published on 28 September 2012

Erratum: Corrigendum: Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers

scholarly article published in Nature Methods

Error Rate Comparison during Polymerase Chain Reaction by DNA Polymerase

scientific article

Evaluation of models determined by neutron diffraction and proposed improvements to their validation and deposition

scientific article published on 24 July 2018

Evaluation system and web infrastructure for the second cryo-EM model challenge

scientific article published on 12 July 2018

Evidence of functional protein dynamics from X-ray crystallographic ensembles

scientific article

Exact direct-space asymmetric units for the 230 crystallographic space groups.

scientific article published on 31 March 2011

Experimentally based orientational refinement of membrane protein models: A structure for the Influenza A M2 H+ channel

scientific article

Exploiting the Substrate Promiscuity of Hydroxycinnamoyl-CoA:Shikimate Hydroxycinnamoyl Transferase to Reduce Lignin

scientific article published on 8 February 2016

Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states

scientific article

Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger

scientific article published on 27 December 2017

Extending the limits of molecular replacement through combined simulated annealing and maximum-likelihood refinement

scientific article published in January 1999

FEM: feature-enhanced map.

scientific article

FINDMOL: automated identification of macromolecules in electron-density maps

scientific article published on 19 October 2005

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

scientific article published on 25 November 2019

Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement

scientific article

From deep TLS validation to ensembles of atomic models built from elemental motions

scientific article published on 28 July 2015

From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum.

scientific article published on 31 August 2016

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation.

scientific article published on 8 June 2018

From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis

scientific article published on 11 April 2013

Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules

scientific article published on 15 May 2009

Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization

scientific article

Golgi enrichment and proteomic analysis of developing Pinus radiata xylem by free-flow electrophoresis

scientific article (publication date: 2013)

Graphical tools for macromolecular crystallography in PHENIX

scientific article

High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production

scientific article

High-resolution structure of RNase P protein from Thermotoga maritima

scientific article

High-throughput enzymatic hydrolysis of lignocellulosic biomass via in-situ regeneration

scientific article published on 29 September 2010

Hitherto unrecognized fluorescence properties of coniferyl alcohol.

scientific article published on 11 March 2010

Identification and Characterization of a Golgi-Localized UDP-Xylose Transporter Family from Arabidopsis

scientific article published on 24 March 2015

Identification of a sphingolipid α-glucuronosyltransferase that is essential for pollen function in Arabidopsis

scientific article

Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production

article

Improved AlphaFold modeling with implicit experimental information

scientific article published in 2022

Improved activity of a thermophilic cellulase, Cel5A, from Thermotoga maritima on ionic liquid pretreated switchgrass

scientific article

Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix

scientific article published on 01 January 2020

Improved crystal orientation and physical properties from single-shot XFEL stills

scientific article

Improved crystallographic models through iterated local density-guided model deformation and reciprocal-space refinement

scientific article

Improved crystallographic structures using extensive combinatorial refinement

scientific article

Improved ligand geometries in crystallographic refinement using AFITT in PHENIX

scientific article

Improved low-resolution crystallographic refinement with Phenix and Rosetta

scientific article

Improving the Accuracy of Macromolecular Structure Refinement at 7 Å Resolution

scientific article

In vitro analysis of carboxyacyl substrate tolerance in the loading and first extension modules of borrelidin polyketide synthase.

scientific article published on 16 September 2014

Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns

scientific article

Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli.

scientific article published on 9 March 2018

Intensity statistics in the presence of translational noncrystallographic symmetry

scientific article published on 16 January 2013

Interactive comparison and remediation of collections of macromolecular structures.

scientific article published on 13 September 2017

Interpretation of ensembles created by multiple iterative rebuilding of macromolecular models

scientific article published on 21 April 2007

Iron-sulfur clusters have no right angles

scientific article published on 04 January 2019

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

scientific article (publication date: 2008)

Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias

scientific article published on 19 April 2008

Joint X-ray and neutron refinement with phenix.refine

scientific article

Jungle Express is a versatile repressor system for tight transcriptional control

scientific article published in Nature Communications

Label-free in situ imaging of lignification in plant cell walls.

scientific article

Label-free in situ imaging of lignification in the cell wall of low lignin transgenic Populus trichocarpa.

scientific article published on 13 June 2009

Ligand identification using electron-density map correlations

scientific article published on 13 December 2006

Ligand placement based on prior structures: the guided ligand-replacement method

scientific article published on 25 December 2013

Macromolecular X-ray structure determination using weak, single-wavelength anomalous data

scientific article

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

scientific article published on 02 October 2019

Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli

scientific article

Map segmentation, automated model-building and their application to the Cryo-EM Model Challenge

scientific article published on 29 July 2018

Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Lysine Metabolism

scientific article published on 07 May 2019

Mechanism of nucleotide sensing in group II chaperonins

scientific article

Metabolic engineering for the high-yield production of isoprenoid-based C₅ alcohols in E. coli.

scientific article published on 8 June 2015

Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production

scientific article published on 29 May 2013

Methyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids

scientific article published on 29 April 2019

Metrics for comparison of crystallographic maps

scientific article

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

scientific article published on 20 February 2018

Microfluidic glycosyl hydrolase screening for biomass-to-biofuel conversion

scientific article published on 22 October 2010

Model morphing and sequence assignment after molecular replacement

scientific article published on 18 October 2013

Modeling membrane proteins utilizing information from silent amino acid substitutions.

scientific article published in February 2004

Modelling dynamics in protein crystal structures by ensemble refinement

scientific article

Models for the transmembrane region of the phospholamban pentamer: which is correct?

scientific article

MolProbity: More and better reference data for improved all-atom structure validation

scientific article published on 25 October 2017

Molecular dynamics applied to X-ray structure refinement

scientific article

Molecular simulations provide new insights into the role of the accessory immunoglobulin-like domain of Cel9A

scientific article published on 06 July 2010

Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules

scientific article

Nanoflow electrospinning serial femtosecond crystallography

scientific article

Natural bacterial communities serve as quantitative geochemical biosensors

scientific article published on 12 May 2015

New applications of simulated annealing in X-ray crystallography and solution NMR.

scientific article published on March 1997

New tools for the analysis and validation of cryo-EM maps and atomic models

scientific article published on 03 September 2018

No observable conformational changes in PSII.

scientific article published on 18 May 2016

Non-invasive imaging of cellulose microfibril orientation within plant cell walls by polarized Raman microspectroscopy

scientific article

On macromolecular refinement at subatomic resolution with interatomic scatterers

scientific article

On symmetries of substructures

scientific article published on 23 October 2003

On the use of logarithmic scales for analysis of diffraction data

scientific article

On-chip integration of droplet microfluidics and nanostructure-initiator mass spectrometry for enzyme screening.

scientific article

Opportunities and challenges with the growth of neutron crystallography ⬇️

scientific article published on October 20, 2010

Optimization of the IPP-bypass mevalonate pathway and fed-batch fermentation for the production of isoprenol in Escherichia coli

scientific article published on 06 September 2019

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

scientific article

PHENIX: a comprehensive Python-based system for macromolecular structure solution

scientific article

PHENIX: building new software for automated crystallographic structure determination

scientific article (publication date: November 2002)

Patterson correlation methods: a review of molecular replacement with CNS.

scientific article

Phaser.MRage: automated molecular replacement

scientific article (publication date: November 2013)

Phasercrystallographic software

scientific article (publication date: August 2007)

Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry

scientific article

Plant cell wall glycosyltransferases: High-throughput recombinant expression screening and general requirements for these challenging enzymes

scientific article

Polder maps: improving OMIT maps by excluding bulk solvent.

scientific article published on February 2017

Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles

scientific article

Pressure stabilizer for reproducible picoinjection in droplet microfluidic systems

scientific article

Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering.

scientific article published on 29 December 2014

Production of anteiso-branched fatty acids in Escherichia coli; next generation biofuels with improved cold-flow properties.

scientific article published on 22 September 2014

Production of jet fuel precursor monoterpenoids from engineered Escherichia coli.

scientific article

Programming new geometry restraints: parallelity of atomic groups

scientific article published on 8 July 2015

Protein structures by spallation neutron crystallography.

scientific article published on 18 April 2008

Raman imaging of cell wall polymers in Arabidopsis thaliana

scientific article

Raman-spectroscopy-based noninvasive microanalysis of native lignin structure

scientific article

Rapid characterization of the activities of lignin-modifying enzymes based on nanostructure-initiator mass spectrometry (NIMS)

scientific article published on 27 September 2018

Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and nanostructure-initiator mass spectrometry (NIMS).

scientific article published on 12 May 2014

Real-space refinement in PHENIX for cryo-EM and crystallography

scientific article published on 30 May 2018

Recent developments for the efficient crystallographic refinement of macromolecular structures

article

Recent developments in phasing and structure refinement for macromolecular crystallography

scientific article published on 21 August 2009

Recent developments in software for the automation of crystallographic macromolecular structure determination

scientific article

Renewable production of high density jet fuel precursor sesquiterpenes from

scientific article published on 20 October 2018

Reply to Kiser: Dioxygen binding in NOV1 crystal structures.

scientific article published on 5 July 2017

Research priorities. Shining light into black boxes

scientific article

Robust indexing for automatic data collection

scientific article

Role of the -phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics

scientific article

Room temperature femtosecond X-ray diffraction of photosystem II microcrystals

scientific article

SPARX, a new environment for Cryo-EM image processing

scientific article published on 16 July 2006

Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature

scientific article

Spectroscopic analyses of the biofuels-critical phytochemical coniferyl alcohol and its enzyme-catalyzed oxidation products.

scientific article published on 23 November 2009

Standard flow liquid chromatography for shotgun proteomics in bioenergy research.

scientific article

Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin

scientific article

Structural Mechanism of Regioselectivity in an Unusual Bacterial Acyl-CoA Dehydrogenase

scientific article published on 02 January 2020

Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6

scientific article

Structural and Biochemical Studies of Actin in Complex with Synthetic Macrolide Tail Analogues

scientific article

Structural basis for double-stranded RNA processing by Dicer

scientific article

Structural basis of light chain amyloidogenicity: comparison of the thermodynamic properties, fibrillogenic potential and tertiary structural features of four Vlambda6 proteins.

scientific article

Structural dynamics in the water and proton channels of photosystem II during the S<sub>2</sub> to S<sub>3</sub> transition

scientific article published on 11 November 2021

Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases

scientific article published on 21 May 2019

Structural organization of the pentameric transmembrane alpha-helices of phospholamban, a cardiac ion channel

scientific article published on October 1994

Structural perspectives of phospholamban, a helical transmembrane pentamer

scientific article

Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase

scientific article

Structure of FabH and factors affecting the distribution of branched fatty acids in Micrococcus luteus

scientific article

Structure of O67745_AQUAE, a hypothetical protein fromAquifex aeolicus

scientific article

Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution

scientific article

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

scientific article

Structure of aryl O-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanism.

scientific article published on 3 April 2017

Structure of endoglucanase Cel9A from the thermoacidophilicAlicyclobacillus acidocaldarius

scientific article

Structure of photosystem II and substrate binding at room temperature.

scientific article

Structure of rodent urinary proteins ⬇️

scientific article published on October 1, 1990

Structure of the OsSERK2 leucine-rich repeat extracellular domain

scientific article

Structure of the Transmembrane Cysteine Residues in Phospholamban

scientific article published on 01 February 1997

Structure of the human TRiC/CCT Subunit 5 associated with hereditary sensory neuropathy.

scientific article

Structures of the intermediates of Kok's photosynthetic water oxidation clock

scientific article published in Nature

Substructure search procedures for macromolecular structures

scientific article (publication date: November 2003)

Supplementation of intracellular XylR leads to coutilization of hemicellulose sugars

scientific article (publication date: April 2012)

Supramolecular self-assembled chaos: polyphenolic lignin's barrier to cost-effective lignocellulosic biofuels

scientific article

Surprises and pitfalls arising from (pseudo)symmetry

scientific article published on 5 December 2007

Survey of renewable chemicals produced from lignocellulosic biomass during ionic liquid pretreatment

scientific article published on 28 January 2013

TLS from fundamentals to practice

scientific article

Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.

scientific article

Targeted proteomics for metabolic pathway optimization: application to terpene production.

scientific article published on 5 January 2011

The Experiment Data Depot: a web-based software tool for biological experimental data storage, sharing, and visualization

scientific article

The Phenix software for automated determination of macromolecular structures

scientific article (publication date: September 2011)

The plant glycosyltransferase clone collection for functional genomics.

scientific article

The protein structure initiative structural genomics knowledgebase.

scientific article

Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions

scientific article

Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis

scientific article published on 10 April 2013

Towards automated crystallographic structure refinement with phenix.refine

scientific article (publication date: April 2012)

Towards industrial production of isoprenoids in Escherichia coli: lessons learned from CRISPR-Cas9 based optimization of a chromosomally integrated mevalonate pathway.

scientific article published on 26 December 2017

Tracing determinants of dual substrate specificity in glycoside hydrolase family 5.

scientific article

Transmembrane signal transduction of the alpha(IIb)beta(3) integrin

scientific article

Understanding changes in lignin of Panicum virgatum and Eucalyptus globulus as a function of ionic liquid pretreatment

scientific article published on 31 August 2012

Understanding the role of histidine in the GHSxG acyltransferase active site motif: evidence for histidine stabilization of the malonyl-enzyme intermediate

scientific article

Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism

scientific article published on 20 May 2020

Use of Nanostructure-Initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases.

scientific article

Use of a new label, (13)==(18)O, in the determination of a structural model of phospholamban in a lipid bilayer. Spatial restraints resolve the ambiguity arising from interpretations of mutagenesis data.

scientific article published in July 2000

Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution

scientific article published on 16 March 2012

Using support vector machines to improve elemental ion identification in macromolecular crystal structures

scientific article published on 25 April 2015

Utilizing a highly responsive gene, yhjX, in E. coli based production of 1,4-butanediol

article

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling

scientific article

X-ray crystallographic and kinetic studies of human sorbitol dehydrogenase

scientific article

X-ray diffraction analysis and in vitro characterization of the UAM2 protein from Oryza sativa.

scientific article published on 29 March 2017

iotbx.cif: a comprehensive CIF toolbox

scientific article

phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics

scientific article

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