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List of works by Kazutaka Katoh

A heuristic approach of maximum likelihood method for inferring phylogenetic tree and an application to the mammalian SOX-3 origin of the testis-determining gene SRY.

scientific article

A simple method to control over-alignment in the MAFFT multiple sequence alignment program

scientific article published on 26 February 2016

Adding unaligned sequences into an existing alignment using MAFFT and LAST.

scientific article

Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees

scientific article

Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

scientific article

Benchmarking the discrimination power of commonly used markers and amplicons in marine fish (e)DNA (meta)barcoding

scientific article published in 2024

Comparative analyses of lysophosphatidic acid receptor-mediated signaling

scientific article

Cyclostome hemoglobins are possibly paralogous to gnathostome hemoglobins

scientific article published in August 2002

Functional lysophosphatidic acid receptors expressed in Oryzias latipes

scientific article published on 28 August 2014

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

scientific article published on 16 April 2015

Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny

scientific article published on October 2001

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

scientific article

Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease

scientific article published on 22 July 2019

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

scientific article (publication date: April 2013)

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

scientific article

MAFFT version 5: improvement in accuracy of multiple sequence alignment

scientific article

MAFFT-DASH: integrated protein sequence and structural alignment

scientific article published on 01 July 2019

MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences

scientific article

Molecular evolution of arthropod color vision deduced from multiple opsin genes of jumping spiders

scientific article

Multiple alignment of DNA sequences with MAFFT

scientific article (publication date: 2009)

Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes

scientific article

Parallelization of MAFFT for large-scale multiple sequence alignments

scientific article

Parallelization of the MAFFT multiple sequence alignment program

scientific article

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

scientific article

Protein multiple sequence alignment

scientific article published on January 2008

Recent developments in the MAFFT multiple sequence alignment program

scientific article (publication date: July 2008)

Sponge homologs of vertebrate protein tyrosine kinases and frequent domain shufflings in the early evolution of animals before the parazoan-eumetazoan split

scientific article published on December 2001

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.

scientific article published on 15 May 2013

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