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List of works by Naoki Osada

A Generalized Linear Model for Decomposing Cis-regulatory, Parent-of-Origin, and Maternal Effects on Allele-Specific Gene Expression

scientific article

A family tree of vertebrate chemokine receptors for a unified nomenclature

scientific article published on 02 February 2011

A key metabolic gene for recurrent freshwater colonization and radiation in fishes

scientific article published on 01 May 2019

A tandem gene duplication followed by recruitment of a retrotransposon created the paralogous bucentaur gene (bcntp97) in the ancestral ruminant.

scientific article published on 29 December 2005

A transposable element-mediated gene divergence that directly produces a novel type bovine Bcnt protein including the endonuclease domain of RTE-1.

scientific article

Aberrant termination of reproduction-related TMEM30C transcripts in the hominoids

scientific article published on 12 December 2006

Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus/sinensis complex (Poaceae).

scientific article

An Individual-Based Diploid Model Predicts Limited Conditions Under Which Stochastic Gene Expression Becomes Advantageous

scientific article

Analysis of 5'-end sequences of chimpanzee cDNAs

scientific article

Ancient genome-wide admixture extends beyond the current hybrid zone between Macaca fascicularis and M. mulatta

scientific article published on 23 June 2010

Assignment of 118 novel cDNAs of cynomolgus monkey brain to human chromosomes

scientific article

CYP2D44 polymorphisms in cynomolgus and rhesus macaques.

scientific article

Characterization of MHC class I transcripts of a Malaysian cynomolgus macaque by high-throughput pyrosequencing and EST libraries

scientific article

Cis- and Trans-regulatory Effects on Gene Expression in a Natural Population of Drosophila melanogaster

scientific article published on 14 June 2017

Collection of Macaca fascicularis cDNAs derived from bone marrow, kidney, liver, pancreas, spleen, and thymus

scientific article

Complex patterns of cis-regulatory polymorphisms in ebony underlie standing pigmentation variation in Drosophila melanogaster

scientific article

Comprehensive phylogenomic analysis reveals a novel cluster of simian endogenous retroviral sequences in Colobinae monkeys

scientific article published on 12 June 2018

CpG site degeneration triggered by the loss of functional constraint created a highly polymorphic macaque drug-metabolizing gene, CYP1A2.

scientific article

Cynomolgus monkey testicular cDNAs for discovery of novel human genes in the human genome sequence

scientific article

Demographic History of the Brown Bear (Ursus arctos) on Hokkaido Island, Japan, Based on Whole-Genomic Sequence Analysis

Development of an integrative database with 499 novel microsatellite markers for Macaca fascicularis

scientific article

Development of genotyping method for functionally relevant variants of cytochromes P450 in cynomolgus macaques

scientific article

Dopamine receptor genes and evolutionary differentiation in the domestication of fighting cocks and long-crowing chickens

scientific article

Duplication and gene conversion in the Drosophila melanogaster genome

scientific article

Dysfunctional missense variant of OAT10/SLC22A13 decreases gout risk and serum uric acid levels

scientific article published on 28 November 2019

Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts

scientific article

Evolution of sexual isolation during secondary contact: genotypic versus phenotypic changes in laboratory populations

scientific article published on 28 February 2005

Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae).

scientific article

Expressed sequence tags from cynomolgus monkey (Macaca fascicularis) liver: a systematic identification of drug-metabolizing enzymes

scientific article

Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX.

scientific article

Finding the factors of reduced genetic diversity on X chromosomes of Macaca fascicularis: male-driven evolution, demography, and natural selection

scientific article

Footprints of natural and artificial selection for photoperiod pathway genes in Oryza

scientific article published on 8 March 2012

Genetic diversity and population structure of Glossina morsitans morsitans in the active foci of human African trypanosomiasis in Zambia and Malawi

scientific article published on 25 July 2019

Genetic diversity in humans and non-human primates and its evolutionary consequences

scientific article

Genetic variants of CYP3A4 and CYP3A5 in cynomolgus and rhesus macaques.

scientific article published on 12 November 2009

Genome-scale approaches for studying human and non-human primate evolution

scientific article published on 01 January 2015

Genomic inferences of the cis-regulatory nucleotide polymorphisms underlying gene expression differences between Drosophila melanogaster mating races

scientific article published on 5 June 2006

House mouse Mus musculus dispersal in East Eurasia inferred from 98 newly determined complete mitochondrial genome sequences

scientific article published on 15 September 2020

IL-10 is a negative regulatory factor of CAWS-vasculitis in CBA/J mice as assessed by comparison with Bruton's tyrosine kinase-deficient CBA/N mice

scientific article published on 12 August 2009

Identification of a novel CXCL1-like chemokine gene in macaques and its inactivation in hominids

scientific article published in January 2007

Inference of expression-dependent negative selection based on polymorphism and divergence in the human genome

scientific article

Inferring the mode of speciation from genomic data: a study of the great apes

scientific article

Insights into <i>Mus musculus</i> Population Structure across Eurasia Revealed by Whole-Genome Analysis

Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta

scientific article published on 24 February 2008

Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome C oxidase complex

scientific article published in September 2011

Molecular cloning, genomic characterization and over-expression of a novel gene, XRRA1, identified from human colorectal cancer cell HCT116Clone2_XRR and macaque testis

scientific article

Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: evidence of genome-wide admixture

scientific article published on 28 July 2010

Multiple duplication of the bucentaur gene family, which recruits the APE-like domain of retrotransposon: Identification of a novel homolog and distinct cellular expression.

scientific article published on 3 February 2009

Novel DNA sequence isolated from blood donors with high transaminase levels

scientific article

Novel endogenous simian retroviral integrations in Vero cells: implications for quality control of a human vaccine cell substrate

scientific article published on 12 January 2018

Phylogenetic Inconsistency Caused by Ancient Sex-Biased Gene Migration ⬇️

scientific article published on September 29, 2011

Population Genetics in Nonmodel Organisms: II. Natural Selection in Marginal Habitats Revealed by Deep Sequencing on Dual Platforms

article

Population genetics of non-genetic traits: evolutionary roles of stochasticity in gene expression.

scientific article

Positive and negative regulation of adenovirus infection by CAR-like soluble protein, CLSP.

scientific article published on 31 May 2007

Prdm9 polymorphism unveils mouse evolutionary tracks

scientific article

Quantifying dominance and deleterious effect on human disease genes

scholarly article

Rate of evolution in brain-expressed genes in humans and other primates

scientific article published in February 2007

Search for genes positively selected during primate evolution by 5'-end-sequence screening of cynomolgus monkey cDNAs

scientific article

Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs

scientific article

Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history

scientific article

The evolution of mammalian chemokine genes.

scientific article published on August 2010

The genome landscape of the african green monkey kidney-derived vero cell line

scientific article

Translational Repression of a Splice Variant of Cynomolgus Macaque CXCL1L by Its C-Terminal Sequence.

scientific article published on 10 February 2017

Weak selection and protein evolution

scientific article

Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome

scientific article (publication date: 2 July 2012)

Whole-genome sequencing of six Mauritian Cynomolgus macaques (Macaca fascicularis) reveals a genome-wide pattern of polymorphisms under extreme population bottleneck

scientific article published on 23 March 2015

Whole-genome sequencing of tibetan macaque (Macaca Thibetana) provides new insight into the macaque evolutionary history

scientific article (publication date: June 2014)

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