List of works by Bianca Habermann

A Guide to Computational Methods for Predicting Mitochondrial Localization

scientific article published on January 2017

A Tad-like apparatus is required for contact-dependent prey killing in predatory social bacteria

scientific article published on 10 September 2021

A cell cycle-regulated Slx4-Dpb11 complex promotes the resolution of DNA repair intermediates linked to stalled replication.

scientific article published on July 2014

A novel 3-hydroxysteroid dehydrogenase that regulates reproductive development and longevity

scientific article

A transcriptomics resource reveals a transcriptional transition during ordered sarcomere morphogenesis in flight muscle.

scientific article published on 30 May 2018

A user-centred evaluation framework for the Sealife semantic web browsers

scientific article published in October 2009

APPL proteins link Rab5 to nuclear signal transduction via an endosomal compartment

scientific article

An Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries

scientific article

An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division

scientific article

An essential function of the C. elegans ortholog of TPX2 is to localize activated aurora A kinase to mitotic spindles.

scientific article published in August 2005

AnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators

scientific article published on 29 July 2021

Apoptosis protection by the Epo target Bcl-X(L) allows factor-independent differentiation of primary erythroblasts

scientific article

Atf3 links loss of epithelial polarity to defects in cell differentiation and cytoarchitecture

BCL-XL blockage in TNBC models confers vulnerability to inhibition of specific cell cycle regulators

scientific article published on 03 September 2021

Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity

scientific article published on 27 May 2012

Centriole assembly requires both centriolar and pericentriolar material proteins

scientific article

Characterization of the sea urchin mitochondrial transcription factor A reveals unusual features.

scientific article published in November 2013

Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment

scientific article

Cofilin recruits F-actin to SPCA1 and promotes Ca2+-mediated secretory cargo sorting

scientific article published on September 2014

Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.

scientific article

Comparative transcriptional profiling of the axolotl limb identifies a tripartite regeneration-specific gene program

scientific article

Conformational Adaptability of Redβ during DNA Annealing and Implications for Its Structural Relationship with Rad52

DEQOR: a web-based tool for the design and quality control of siRNAs

scientific article

DNA–protein crosslink repair: proteases as DNA repair enzymes

scholarly article by Julian Stingele published in February 2015

Dietary restriction induced longevity is mediated by nuclear receptor NHR-62 in Caenorhabditis elegans ⬇️

scientific article (publication date: 2013)

Distinct roles for two C. elegans anillins in the gonad and early embryo

scientific article published in June 2005

Drosophila melanogaster LRPPRC2 is involved in coordination of mitochondrial translation

scientific article

Dynamin and the actin cytoskeleton cooperatively regulate plasma membrane invagination by BAR and F-BAR proteins

scientific article

Erratum: Corrigendum: Systems survey of endocytosis by multiparametric image analysis

scientific article published in Nature

Erythroid progenitor renewal versus differentiation: genetic evidence for cell autonomous, essential functions of EpoR, Stat5 and the GR.

scientific article published on May 2006

From biomedicine to natural history research: EST resources for ambystomatid salamanders

scientific article

Genome-scale RNAi profiling of cell division in human tissue culture cells

scientific article

Genome-wide analysis of human kinases in clathrin- and caveolae/raft-mediated endocytosis

scientific article published in Nature

Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies

scientific article

HAUS, the 8-subunit human Augmin complex, regulates centrosome and spindle integrity

scientific article

HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons

scientific article published on 29 April 2017

HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition

scientific article

High-resolution TADs reveal DNA sequences underlying genome organization in flies.

scientific article published on 15 January 2018

Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome

scientific article published in September 2004

Human Holliday junction resolvase GEN1 uses a chromodomain for efficient DNA recognition and cleavage

scientific article published on 18 December 2015

Human intellectual disability genes form conserved functional modules in Drosophila.

scientific article

Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer

scientific article published in Nature Communications

Identification of the C. elegans anaphase promoting complex subunit Cdc26 by phenotypic profiling and functional rescue in yeast

scientific article

Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB).

scientific article

Interaction between Sec7p and Pik1p: the first clue for the regulation of a coincidence detection signal.

scientific article published in August 2010

Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs)

scientific article published on 01 July 2021

Islet cell autoantigen of 69 kDa is an arfaptin-related protein associated with the Golgi complex of insulinoma INS-1 cells

scientific article

Isolation of translationally controlled mRNAs by differential screening.

scientific article

LET-767 is required for the production of branched chain and long chain fatty acids in Caenorhabditis elegans

scientific article

MTERF1 binds mtDNA to prevent transcriptional interference at the light-strand promoter but is dispensable for rRNA gene transcription regulation

scientific journal article

MTERF3 regulates mitochondrial ribosome biogenesis in invertebrates and mammals

scientific article

MTERF4 regulates translation by targeting the methyltransferase NSUN4 to the mammalian mitochondrial ribosome

scientific article

Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment

scientific article published on 11 July 2016

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

scientific article

Mitochondrial fusion is required for regulation of mitochondrial DNA replication

scientific article published on 06 June 2019

Modulation of receptor recycling and degradation by the endosomal kinesin KIF16B

scientific article

Molecular strategies of the Caenorhabditis elegans dauer larva to survive extreme desiccation

scientific article published in 2013

Mutations in mouse Aspm (abnormal spindle-like microcephaly associated) cause not only microcephaly but also major defects in the germline

scientific journal article

NSUN4 is a dual function mitochondrial protein required for both methylation of 12S rRNA and coordination of mitoribosomal assembly

scientific article

PDZ-domain-binding sites are common among cadherins

article

Phenotypic and genomic comparison of Photorhabdus luminescens subsp. laumondii TT01 and a widely used rifampicin-resistant Photorhabdus luminescens laboratory strain

scientific article published on 29 November 2018

Postnatal Tshz3 Deletion Drives Altered Corticostriatal Function and Autism Spectrum Disorder–like Behavior

scientific article published on 28 March 2019

Prednisolone rescues Duchenne Muscular Dystrophy phenotypes in human pluripotent stem cells-derived skeletal muscle in vitro

scientific article published on 29 October 2020

Prednisolone rescues Duchenne muscular dystrophy phenotypes in human pluripotent stem cell-derived skeletal muscle in vitro

scientific article

ProFAT: a web-based tool for the functional annotation of protein sequences

scientific article

Production of endoribonuclease-prepared short interfering RNAs for gene silencing in mammalian cells

article

Protein Domains of GTPases on Membranes: Do They Rely on Turing’s Mechanism?

Publisher Correction: Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer

scientific article published in Nature Communications

Rec8 phosphorylation by casein kinase 1 and Cdc7-Dbf4 kinase regulates cohesin cleavage by separase during meiosis

scientific article published on March 2010

Regulation and function of H3K36 di-methylation by the trithorax-group protein complex AMC.

scientific article published on 14 March 2018

Requirement of branched chain and long chain fatty acids in C. elegans

Revision and reannotation of the Halomonas elongata DSM 2581T genome

scientific article published on 27 March 2017

Role of the mitochondrial protein LRPPRC2 in Drosophila melanogaster

SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

scientific article published on 26 January 2018

SeLOX--a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems

scientific article published on 6 June 2010

Secretory cargo sorting by Ca2+-dependent Cab45 oligomerization at the trans-Golgi network

scientific article

Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance.

scientific article published on 23 April 2019

Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity

scientific article

Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex.

scientific article published on 22 June 2016

Structure of leech derived tryptase inhibitor (LDTI-C) in solution

article

Structure of the human MTERF4-NSUN4 protein complex that regulates mitochondrial ribosome biogenesis

scientific article

Stu2 promotes mitotic spindle elongation in anaphase.

scientific article

Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27

scientific article published on April 2004

Systems survey of endocytosis by multiparametric image analysis.

scientific article published on 28 February 2010

The BAR-domain family of proteins: a case of bending and binding?

scientific article

The Caenorhabditis elegans Centrosomal Protein SPD-2 Is Required for both Pericentriolar Material Recruitment and Centriole Duplication

The Caenorhabditis elegans centrosomal protein SPD-2 is required for both pericentriolar material recruitment and centriole duplication.

scientific article published in May 2004

The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1

scientific article published on 11 July 2019

The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression

scientific article published on 06 January 2021

The MMS22L-TONSL complex mediates recovery from replication stress and homologous recombination

scientific article

The axolotl genome and the evolution of key tissue formation regulators

scientific article

The bicoid stability factor controls polyadenylation and expression of specific mitochondrial mRNAs in Drosophila melanogaster

scientific article

The clathrin adaptor Gga2p is a phosphatidylinositol 4-phosphate effector at the Golgi exit

scientific article

The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains

scientific article published on 5 January 2018

The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms

scientific article

The deregulated microRNAome contributes to the cellular response to aneuploidy

scientific article published on 14 March 2018

The endosomal protein Appl1 mediates Akt substrate specificity and cell survival in vertebrate development

scientific article published in May 2008

The enigmatic meiotic dense body and its newly discovered component, SCML1, are dispensable for fertility and gametogenesis in mice.

scientific article

The interaction properties of the human Rab GTPase family--comparative analysis reveals determinants of molecular binding selectivity

scientific article

The kinetically dominant assembly pathway for centrosomal asters in Caenorhabditis elegans is gamma-tubulin dependent

scientific article

The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: analysis of ESTs from the hermaphroditic strain

scientific article

The power and the limitations of cross-species protein identification by mass spectrometry-driven sequence similarity searches

scientific article published on 26 December 2003

Transcriptional profiling reveals progeroid Ercc1(-/Δ) mice as a model system for glomerular aging

scientific article

Translational control of putative protooncogene Nm23-M2 by cytokines via phosphoinositide 3-kinase signaling

scientific article published on 7 July 2004

Vav Proteins Are Key Regulators of Card9 Signaling for Innate Antifungal Immunity

scientific article published on December 2016

Virtual pathway explorer (viPEr) and pathway enrichment analysis tool (PEANuT): creating and analyzing focus networks to identify cross-talk between molecules and pathways

scientific article published on 14 October 2015

Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T ) and the laboratory strains R1 and NRC-1

scientific article published on 03 December 2019

XMAP215: a key component of the dynamic microtubule cytoskeleton

scientific article

mRNA export through an additional cap-binding complex consisting of NCBP1 and NCBP3

scientific article

morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring

scientific article

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