List of works - Rasmus Nielsen

A metagenome-wide association study of gut microbiota in type 2 diabetes

scientific article (publication date: 4 October 2012)

A Draft Sequence of the Neandertal Genome

scientific article

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

scientific article (publication date: December 2005)

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

scientific article

Molecular signatures of natural selection

scientific article (publication date: 2005)

Sequencing of 50 human exomes reveals adaptation to high altitude

scientific article

The diploid genome sequence of an Asian individual

scientific article

The evolution of gene expression levels in mammalian organs

scientific article (publication date: 19 October 2011)

The sequence and de novo assembly of the giant panda genome

scientific article

Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

scientific article (publication date: 20 February 2007)

Genotype and SNP calling from next-generation sequencing data

scientific article

A scan for positively selected genes in the genomes of humans and chimpanzees

scientific article

Natural selection on protein-coding genes in the human genome

scientific article (publication date: 20 October 2005)

Genomic scans for selective sweeps using SNP data

scientific article

ANGSD: Analysis of Next Generation Sequencing Data.

scientific article

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

article

Population genomics of Bronze Age Eurasia

scientific article published on June 2015

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

scientific article

Ancient human genome sequence of an extinct Palaeo-Eskimo

scientific article

Assessing the evolutionary impact of amino acid mutations in the human genome

scientific article

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution

scientific article

Patterns of positive selection in six Mammalian genomes

scientific article

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

scientific article

Stochastic Mapping of Morphological Characters

scientific article (publication date: April 2003)

Recent and ongoing selection in the human genome

scientific article

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

scientific article (publication date: 14 August 2014)

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

scientific article

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

scientific article

Ascertainment bias in studies of human genome-wide polymorphism.

scientific article

An Aboriginal Australian genome reveals separate human dispersals into Asia

scientific article (publication date: 7 October 2011)

Genome-wide patterns of nucleotide polymorphism in domesticated rice

scientific article

Statistical tests of selective neutrality in the age of genomics

scientific article

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

scientific article

Species-specific responses of Late Quaternary megafauna to climate and humans

scientific article (publication date: 2 November 2011)

Linkage disequilibrium as a signature of selective sweeps

scientific article

Proportionally more deleterious genetic variation in European than in African populations

scientific article

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution

scientific article

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

scientific article

Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques

scientific article published on 16 October 2011

Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).

scientific article

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

scientific article

Greenlandic Inuit show genetic signatures of diet and climate adaptation

scientific article

Radiation of extant cetaceans driven by restructuring of the oceans

scientific article

Evidence for archaic adaptive introgression in humans

scientific article

A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes

scientific article

Targets of balancing selection in the human genome

scientific article published on 27 August 2009

SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data

scientific article (publication date: 2012)

Ancient biomolecules from deep ice cores reveal a forested southern Greenland

scientific article

List of works by Rasmus Nielsen

A metagenome-wide association study of gut microbiota in type 2 diabetes

A Draft Sequence of the Neandertal Genome

Evolution of genes and genomes on the Drosophila phylogeny

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

Molecular signatures of natural selection

Sequencing of 50 human exomes reveals adaptation to high altitude

The diploid genome sequence of an Asian individual

The evolution of gene expression levels in mammalian organs

The sequence and de novo assembly of the giant panda genome

Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

Genotype and SNP calling from next-generation sequencing data

A scan for positively selected genes in the genomes of humans and chimpanzees

Natural selection on protein-coding genes in the human genome

Genomic scans for selective sweeps using SNP data

ANGSD: Analysis of Next Generation Sequencing Data.

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

Population genomics of Bronze Age Eurasia

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

Ancient human genome sequence of an extinct Palaeo-Eskimo

Assessing the evolutionary impact of amino acid mutations in the human genome

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution

Patterns of positive selection in six Mammalian genomes

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

Stochastic Mapping of Morphological Characters

Recent and ongoing selection in the human genome

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

Ascertainment bias in studies of human genome-wide polymorphism.

An Aboriginal Australian genome reveals separate human dispersals into Asia

Genome-wide patterns of nucleotide polymorphism in domesticated rice

Statistical tests of selective neutrality in the age of genomics

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

Species-specific responses of Late Quaternary megafauna to climate and humans

Linkage disequilibrium as a signature of selective sweeps

Proportionally more deleterious genetic variation in European than in African populations

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques

Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

Greenlandic Inuit show genetic signatures of diet and climate adaptation

Radiation of extant cetaceans driven by restructuring of the oceans

Evidence for archaic adaptive introgression in humans

A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes

Targets of balancing selection in the human genome

SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data

Ancient biomolecules from deep ice cores reveal a forested southern Greenland