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List of works by Stephen Benz

A DNA Motif Lexicon: cataloguing and annotating sequences.

scientific article published in January 2004

A deep learning image-based intrinsic molecular subtype classifier of breast tumors reveals tumor heterogeneity that may affect survival

scientific article published on 28 January 2020

A gene signature for late distant metastasis in breast cancer identifies a potential mechanism of late recurrences

scientific article published on 17 July 2013

A20 and ABIN1 Suppression of a Keratinocyte Inflammatory Program with a Shared Single-Cell Expression Signature in Diverse Human Rashes

scientific article published on 10 December 2018

APOBEC mutation drives early-onset squamous cell carcinomas in recessive dystrophic epidermolysis bullosa

scientific article published on 01 August 2018

An immunogenic NSCLC microenvironment is associated with favorable survival in lung adenocarcinoma

scientific article published on 05 March 2019

Breast cancer growth prevention by statins

scientific article published on September 2006

Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma.

scientific article published on 14 May 2018

Comprehensive genomic transcriptomic tumor-normal gene panel analysis for enhanced precision in patients with lung cancer.

scientific article

Efficient Tumor Clearance and Diversified Immunity through Neoepitope Vaccines and Combinatorial Immunotherapy

scientific article published on 10 July 2019

FOXM1 cistrome predicts breast cancer metastatic outcome better than FOXM1 expression levels or tumor proliferation index

scientific article published on 12 October 2015

Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome

scientific article published on 2 March 2015

HN1L Promotes Triple-Negative Breast Cancer Stem Cells through LEPR-STAT3 Pathway

scientific article

Identification of an immune gene expression signature associated with favorable clinical features in Treg-enriched patient tumor samples.

scientific article

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.

scientific article

Learning subgroup-specific regulatory interactions and regulator independence with PARADIGM.

scientific article published on July 2013

Loss of ZNF750 in ocular and cutaneous sebaceous carcinoma

scientific article published on 08 July 2019

Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin

scientific article

Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components

scientific article published on 07 January 2020

Rapid alteration of microRNA levels by histone deacetylase inhibition

scientific article published on February 2006

Refining the selection of patients with metastatic colorectal cancer for treatment with temozolomide using proteomic analysis of O6-methylguanine-DNA-methyltransferase

scientific article published on 19 December 2018

Subtype and pathway specific responses to anticancer compounds in breast cancer

scientific article published on 14 October 2011

Targeting RPL39 and MLF2 reduces tumor initiation and metastasis in breast cancer by inhibiting nitric oxide synthase signaling

scientific article

The UCSC Cancer Genomics Browser

scientific article (publication date: April 2009)

The UCSC Cancer Genomics Browser: update 2011

scientific article

The UCSC Interaction Browser: multidimensional data views in pathway context

scientific article

The molecular landscape of premenopausal breast cancer

scientific article

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution

scientific article published on 01 October 2018

Transcriptomic silencing as a potential mechanism of treatment resistance

scientific article published on 04 June 2020

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