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List of works by Paul J. Kersey

A chromosome conformation capture ordered sequence of the barley genome

scientific article

Advancing vector biology research: a community survey for future directions, research applications and infrastructure requirements

scientific article published on June 2016

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

scientific article

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

article

Analysis of the bread wheat genome using whole-genome shotgun sequencing

scientific article

Applications of InterPro in protein annotation and genome analysis

scientific article published on September 2002

Assemblathon 1: a competitive assessment of de novo short read assembly methods

scientific article

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article

Automated annotation of microbial proteomes in SWISS-PROT.

scientific article published in February 2003

Building a biological space based on protein sequence similarities and biological ontologies

scientific article published on September 2008

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species ⬇️

scientific article (publication date: 16 May 2012)

Cell cycle, DNA damage and heat shock regulate suc22+ expression in fission yeast

scientific article published on 01 September 1996

Computational Methods and Bioinformatic Tools

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

scientific article

Corrigendum: Towards recommendations for metadata and data handling in plant phenotyping

scientific article published on 01 March 2018

Databases and resources for in silico proteome analysis

scientific article published on January 2006

De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum

scientific article

Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

scientific article published on 14 March 2020

Ensembl BioMarts: a hub for data retrieval across taxonomic space

scientific article

Ensembl Genomes 2013: scaling up access to genome-wide data

scientific article

Ensembl Genomes 2016: more genomes, more complexity

scientific article

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.

scientific article published on 30 October 2017

Ensembl Genomes 2020-enabling non-vertebrate genomic research

scientific article published on 01 January 2020

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species.

scientific article

Ensembl Genomes: extending Ensembl across the taxonomic space

scientific article

Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data.

scientific article

Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data

scientific article

First Draft Genome Sequence of a UK Strain (UK99) of Fusarium culmorum

scientific article published on 15 September 2016

Gene Ontology Consortium: going forward

scientific article (publication date: 2015)

Gene Ontology annotations and resources

scientific article

Genome Reviews: standardizing content and representation of information about complete genomes

scientific article published in January 2006

Genomic information infrastructure after the deluge

scientific article

Gramene 2013: comparative plant genomics resources.

scientific article

Gramene 2016: comparative plant genomics and pathway resources

scientific article

Gramene 2018: unifying comparative genomics and pathway resources for plant research

scientific article

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

scientific article published on 10 November 2020

Gramene database in 2010: updates and extensions

scientific article (publication date: 2011)

Green plant genomes: What we know in an era of rapidly expanding opportunities

scientific article published on 18 January 2022

In silico characterization of proteins: UniProt, InterPro and Integr8.

scientific article published on 04 October 2007

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

scientific article

Integr8: enhanced inter-operability of European molecular biology databases

scientific article

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Interactive InterPro-based comparisons of proteins in whole genomes

scientific article published in February 2002

Linking publication, gene and protein data

scientific article

MCB-mediated regulation of cell cycle-specific cdc22 + transcription in fission yeast

scientific article published on 30 July 2003

Measures for interoperability of phenotypic data: minimum information requirements and formatting

scientific article

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

scientific article published on 28 August 2011

PhytoPath: an integrative resource for plant pathogen genomics.

scientific article

Plant genetic resources for food and agriculture: opportunities and challenges emerging from the science and information technology revolution

scientific article

Plant genome sequences: past, present, future

scientific article published on 19 December 2018

PomBase 2015: updates to the fission yeast database

scientific article

PomBase: a comprehensive online resource for fission yeast

scientific article

Positive and negative roles for cdc10 in cell cycle gene expression

scientific article published on December 1995

Progress in Establishing Common Standards for Exchanging Proteomics Data: The Second Meeting of the HUPO Proteomics Standards Initiative

scientific article

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes

scientific article

RNAcentral: A vision for an international database of RNA sequences

scientific article (publication date: November 2011)

RNAcentral: an international database of ncRNA sequences

scientific article

Ribosomic DNA intergenic spacer 1 region is useful when identifying Candida parapsilosis spp. complex based on high-resolution melting analysis.

scientific article published on 20 May 2014

Standards recommendations for the Earth BioGenome Project

scientific article published on 18 January 2022

Studying Culicoides vectors of BTV in the post-genomic era: resources, bottlenecks to progress and future directions

scientific article published on 17 December 2013

The EMBL Nucleotide Sequence and Genome Reviews Databases

scientific article

The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

scientific article published on 12 March 2003

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

scientific article (publication date: February 2004)

The HUPO Proteomics Standards Initiative Meeting: Towards Common Standards for Exchanging Proteomics Data

scientific article

The Integr8 project--a resource for genomic and proteomic data

scientific article

The International Protein Index: an integrated database for proteomics experiments

scientific article (publication date: July 2004)

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes

scientific article published on January 2003

Towards an open grapevine information system

scientific article

Towards recommendations for metadata and data handling in plant phenotyping.

scientific article published on 4 June 2015

Triticeae resources in Ensembl Plants

scientific article

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

scientific article

Understanding the users and uses of UK Natural History Collections

scientific article published on 2 October 2023

Uses and benefits of digital sequence information from plant genetic resources: Lessons learnt from botanical collections

scientific article

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

article

WormBase 2012: more genomes, more data, new website

scientific article

WormBase 2014: new views of curated biology

scientific article

WormBase 2016: expanding to enable helminth genomic research

scientific article

WormBase 2017: molting into a new stage.

scientific article published on 24 October 2017

WormBase ParaSite - a comprehensive resource for helminth genomics

scientific article

WormBase: Annotating many nematode genomes

scientific article published on January 2012

transPLANT Resources for Triticeae Genomic Data.

scientific article

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