List of works - Matthew D. MacManes

A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses

scientific article published on 23 July 2020

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus

scientific article

Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent

scientific article published on 04 March 2020

Comparative genomics explains the evolutionary success of reef-forming corals

scientific article

De novo genome assembly of Geosmithia morbida, the causal agent of thousand cankers disease

scientific article (publication date: 2016)

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

scientific article (publication date: August 2013)

Divergent selection and drift shape the genomes of two avian sister species spanning a saline-freshwater ecotone

scientific article published on 07 November 2019

Dynamic pigmentary and structural coloration within cephalopod chromatophore organs

scientific article published on 01 March 2019

Improving transcriptome assembly through error correction of high-throughput sequence reads ⬇️

scientific article published on July 23, 2013

Is promiscuity associated with enhanced selection on MHC-DQα in mice (genus Peromyscus)?

scientific article

Isolation and characterization of polymorphic microsatellite loci from Octodon degus

scientific article

Museum genomics: low-cost and high-accuracy genetic data from historical specimens

scientific article

On the optimal trimming of high-throughput mRNA sequence data

scientific article

Physiological and biochemical changes associated with acute experimental dehydration in the desert adapted mouse, Peromyscus eremicus

scientific article published on March 2017

Promiscuity in mice is associated with increased vaginal bacterial diversity ⬇️

scientific article published on October 1, 2011

Severe acute dehydration in a desert rodent elicits a transcriptional response that effectively prevents kidney injury

scientific article published on 5 April 2017

The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly

scientific article published in 2018

The social brain: transcriptome assembly and characterization of the hippocampus from a social subterranean rodent, the colonial tuco-tuco (Ctenomys sociabilis)

scientific article

When non-coding is non-neutral: the role of CHD1 gene polymorphism in sexing, in phylogenetics and as a correlate of fitness in birds

article

List of works by Matthew D. MacManes

A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus

Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent

Comparative genomics explains the evolutionary success of reef-forming corals

De novo genome assembly of Geosmithia morbida, the causal agent of thousand cankers disease

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Divergent selection and drift shape the genomes of two avian sister species spanning a saline-freshwater ecotone

Dynamic pigmentary and structural coloration within cephalopod chromatophore organs

Improving transcriptome assembly through error correction of high-throughput sequence reads ⬇️

Is promiscuity associated with enhanced selection on MHC-DQα in mice (genus Peromyscus)?

Isolation and characterization of polymorphic microsatellite loci from Octodon degus

Museum genomics: low-cost and high-accuracy genetic data from historical specimens

On the optimal trimming of high-throughput mRNA sequence data

Physiological and biochemical changes associated with acute experimental dehydration in the desert adapted mouse, Peromyscus eremicus

Promiscuity in mice is associated with increased vaginal bacterial diversity ⬇️

Severe acute dehydration in a desert rodent elicits a transcriptional response that effectively prevents kidney injury

The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly

The social brain: transcriptome assembly and characterization of the hippocampus from a social subterranean rodent, the colonial tuco-tuco (Ctenomys sociabilis)

When non-coding is non-neutral: the role of CHD1 gene polymorphism in sexing, in phylogenetics and as a correlate of fitness in birds