List of works - Martin Hunt

Roary: rapid large-scale prokaryote pan genome analysis

scientific article

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article

Circlator: automated circularization of genome assemblies using long sequencing reads

scientific article

REAPR: a universal tool for genome assembly evaluation

scientific article

A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni

scientific article

Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus

scientific article

The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery

scientific article

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

scientific article

A comprehensive evaluation of assembly scaffolding tools

scientific article published on March 3, 2014

IVA: accurate de novo assembly of RNA virus genomes

scientific article

Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel

scientific article

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes

scientific article published on 17 November 2015

Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes.

scientific article published on 14 February 2013

A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions

scientific article published on 11 February 2016

Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans

scientific article

Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA.

scientific article

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs

scientific article published on 3 May 2017

Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences

scientific article published on 09 November 2021

List of works by Martin Hunt

Roary: rapid large-scale prokaryote pan genome analysis

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Circlator: automated circularization of genome assemblies using long sequencing reads

REAPR: a universal tool for genome assembly evaluation

A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni

Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus

The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

A comprehensive evaluation of assembly scaffolding tools

IVA: accurate de novo assembly of RNA virus genomes

Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes

Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes.

A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions

Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans

Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA.

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs

Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences

Inferring synteny between genome assemblies: a systematic evaluation