List of works by Jose M. Duarte

A PDB-wide, evolution-based assessment of protein-protein interfaces.

scientific article

An analysis of oligomerization interfaces in transmembrane proteins.

scientific article

Assessment of protein assembly prediction in CASP12.

scientific article published on 26 October 2017

Assessment of protein assembly prediction in CASP13

scientific article published on 27 August 2019

Automated evaluation of quaternary structures from protein crystals.

scientific article

BioJava 5: A community driven open-source bioinformatics library

scientific article published on 08 February 2019

CMView: interactive contact map visualization and analysis.

scientific article published on 5 April 2011

Defining an essence of structure determining residue contacts in proteins

scientific article

Designing evolvable libraries using multi-body potentials

scientific article published on 26 August 2009

Gene expression profiling studies on Caenorhabditis elegans dystrophin mutants dys-1(cx-35) and dys-1(cx18).

scientific article published on 7 September 2006

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

scientific article

MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures

scientific article

Optimal contact definition for reconstruction of contact maps

scientific article

PDBWiki: added value through community annotation of the Protein Data Bank

scientific article

Protein interface classification by evolutionary analysis

scientific article

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

scientific article published on 29 November 2019

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

article

Real time structural search of the protein data bank

scientific article published on 08 July 2020

Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys.

scientific article

Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences

scientific article published on 16 October 2019

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

scientific article

The structural impact of cancer-associated missense mutations in oncogenes and tumor suppressors

scientific article

Towards an efficient compression of 3D coordinates of macromolecular structures

scientific article

Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts

scientific article

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