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List of works by Thomas Mailund

A fast algorithm for genome-wide haplotype pattern mining

scientific article

A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species

scientific article (publication date: 2012)

A practical O(n log2 n) time algorithm for computing the triplet distance on binary trees

scientific article

A sub-cubic time algorithm for computing the quartet distance between two general trees

scientific article published on 3 June 2011

Algorithms for computing the triplet and quartet distances for binary and general trees

scientific article

An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes

scientific article

Ancestral population genomics: the coalescent hidden Markov model approach

scientific article published on 06 July 2009

Association mapping and disease: evolutionary perspectives.

scientific article published on January 2012

Author Correction: Comparative and demographic analysis of orang-utan genomes

correction of a scholarly article

Author Correction: Direct estimation of mutations in great apes reconciles phylogenetic dating

scientific article published on 01 May 2019

Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover

scientific article published on 25 April 2019

CoaSim: a flexible environment for simulating genetic data under coalescent models

scientific article

Comparative and demographic analysis of orang-utan genomes

scientific article

Comparative annotation of viral genomes with non-conserved gene structure

scientific article published on 6 March 2007

Computing the all-pairs quartet distance on a set of evolutionary trees.

scientific article published in February 2008

Cultural Phylogenetics of the Tupi Language Family in Lowland South America

scientific article (publication date: 10 April 2012)

Direct estimation of mutations in great apes reconciles phylogenetic dating

scientific article published on 21 January 2019

Efficient computation in the IM model.

scientific article published on 16 April 2013

Efficient whole-genome association mapping using local phylogenies for unphased genotype data

scientific article

Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model ⬇️

scientific article published on March 3, 2011

Extensive X-linked adaptive evolution in central chimpanzees

scientific article published on 23 January 2012

Fast calculation of the quartet distance between trees of arbitrary degrees

scientific article published on 25 September 2006

Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model

scientific article

Great ape genetic diversity and population history

scientific article published on 03 July 2013

Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups

scientific article

Identifying loci under positive selection in complex population histories

scientific article published on 30 July 2019

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

scientific article (publication date: March 2011)

Insights into hominid evolution from the gorilla genome sequence

scientific article

Investigating selection on viruses: a statistical alignment approach

scientific article

Local genealogies in a linear mixed model for genome-wide association mapping in complex pedigreed populations

scientific article

On computing the coalescence time density in an isolation-with-migration model with few samples.

scientific article published on 14 February 2011

Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing

scientific article

QDist--quartet distance between evolutionary trees

scientific article published on 12 February 2004

RBT--a tool for building refined Buneman trees.

scientific article

Rapid Neighbour-Joining

Recrafting the neighbor-joining method

scientific article published on 19 January 2006

SNPFile--a software library and file format for large scale association mapping and population genetics studies

scientific article (publication date: 8 December 2008)

The bonobo genome compared with the chimpanzee and human genomes

scientific article

The comparative genomics and complex population history of baboons

scientific article published on 30 January 2019

Using biological networks to search for interacting loci in genome-wide association studies

scientific article published on 11 March 2009

Whole genome association mapping by incompatibilities and local perfect phylogenies

scientific article published on 16 October 2006

tqDist: a library for computing the quartet and triplet distances between binary or general trees.

scientific article

zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm

scientific article

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