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List of works by Tomas Vinar

CAGE: Combinatorial Analysis of Gene-cluster Evolution

scientific article

Comparative and demographic analysis of orang-utan genomes

scientific article

Convergent evolution of the genomes of marine mammals

scientific article published on 26 January 2015

DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads.

scientific article

Discovery of RNA motifs using a computational pipeline that allows insertions in paired regions and filtering of candidate sequences

scientific article published in January 2012

Draft Genome Sequence of an Obligate Psychrophilic Yeast, Candida psychrophila NRRL Y-17665T.

scientific article published on 31 August 2017

Erratum: The sequence and de novo assembly of the giant panda genome

scientific article published in Nature

Evolution of linear chromosomes and multipartite genomes in yeast mitochondria. ⬇️

scientific article

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

scientific article

Evolutionary genetics and implications of small size and twinning in callitrichine primates

scientific article (publication date: 28 January 2014)

Evolutionary history reconstruction for Mammalian complex gene clusters

scientific article

ExonHunter: a comprehensive approach to gene finding

scientific article published in June 2005

Fast computation of a string duplication history under no-breakpoint-reuse

scientific article published on 21 April 2014

Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence.

scientific article published on 05 March 2009

GAML: genome assembly by maximum likelihood

scientific article published on 3 June 2015

Genome Sequence of Flavor-Producing Yeast Saprochaete suaveolens NRRL Y-17571

scientific article published on 28 February 2019

Genome Sequence of an Arthroconidial Yeast, Saprochaete fungicola CBS 625.85

scientific article published on 11 April 2019

Genome Sequence of the Yeast Saprochaete ingens CBS 517.90

scientific article published on 12 December 2019

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

scientific article

Homology search for genes

scientific article

Isometric gene tree reconciliation revisited

scientific article published on 13 June 2017

Massive programmed translational jumping in mitochondria.

scientific article published on 07 April 2014

Optimal spaced seeds for homologous coding regions.

scientific article

Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii)

scientific article (publication date: 2013)

Positive selection on apoptosis related genes

scientific article published on 22 December 2009

Probabilistic approaches to alignment with tandem repeats

scientific article

RNA motif search with data-driven element ordering.

scientific article

Reconstructing histories of complex gene clusters on a phylogeny

scientific article published in September 2010

Surveillance of SARS-CoV-2 lineage B.1.1.7 in Slovakia using a novel, multiplexed RT-qPCR assay

scientific article published on 14 October 2021

The genome of the hydatid tapeworm Echinococcus granulosus

scientific article

The sequence and de novo assembly of the giant panda genome

scientific article

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

scientific article

Time-adjusted Analysis Shows Weak Associations Between BCG Vaccination Policy and COVID-19 Disease Progression

scientific article published on 06 May 2020

Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources

scientific article published on 07 March 2022

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