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List of works by Julien Y Dutheil

A Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi.

scientific article published on 12 February 2016

A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion

scientific article published on 4 November 2013

A model-based approach for detecting coevolving positions in a molecule

scientific article published on 8 June 2005

A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species

scientific article (publication date: 2012)

Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation

scientific article published on 2 February 2012

Ancestral population genomics

scientific article published on January 2012

Ancestral population genomics: the coalescent hidden Markov model approach

scientific article published on 06 July 2009

Author Correction: Comparative and demographic analysis of orang-utan genomes

correction of a scholarly article

BAOBAB: a Java editor for large phylogenetic trees

scientific article

Base Pairing Constraints Drive Structural Epistasis in Ribosomal RNA Sequences

scientific article published on 08 March 2010

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

scientific article

Bio++: efficient extensible libraries and tools for computational molecular evolution.

scientific article

Coevolution within and between genes

scientific article published on January 2007

Comparative and demographic analysis of orang-utan genomes

scientific article

Comparing fungal genomes: insight into functional and evolutionary processes

scientific article published in January 2012

Detecting coevolving positions in a molecule: why and how to account for phylogeny ⬇️

scientific article published on September 24, 2011

Detecting groups of coevolving positions in a molecule: a clustering approach

scientific article

Detecting site-specific biochemical constraints through substitution mapping

scientific article

Efficient selection of branch-specific models of sequence evolution

scientific article published on 2 February 2012

Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model ⬇️

scientific article published on March 3, 2011

Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes

scientific article

Experimental Evaluation of a Direct Fitness Effect of the De Novo Evolved Mouse Gene <i>Pldi</i>

scientific article published in May 2024

Extreme selective sweeps independently targeted the X chromosomes of the great apes

scientific article published on 4 May 2015

Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping

scientific article

Fine-Scale Recombination Maps of Fungal Plant Pathogens Reveal Dynamic Recombination Landscapes and Intragenic Hotspots.

scientific article published on 20 December 2017

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species

scientific article

IMPACT: Integrated Multiprogram Platform for Analyses in ConTest ⬇️

scientific article published on March 16, 2011

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

scientific article (publication date: March 2011)

Inference of recombination maps from a single pair of genomes and its application to ancient samples

scientific article published on 14 November 2019

Insights into hominid evolution from the gorilla genome sequence

scientific article

MafFilter: a highly flexible and extensible multiple genome alignment files processor

scientific article published on 22 January 2014

Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals

scientific article published on 10 April 2014

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

scientific article

Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off

scientific article published on 9 June 2015

Plant pathogens provide clues to the potential origin of bat white-nose syndrome <i>Pseudogymnoascus destructans</i>

scientific article published on 01 December 2022

Population Genomics of the Maize Pathogen <i>Ustilago maydis</i>: Demographic History and Role of Virulence Clusters in Adaptation

scientific article published on 10 April 2021

Positively selected effector genes and their contribution to virulence in the smut fungus Sporisorium reilianum.

scientific article published on 30 January 2018

Recombination difference between sexes: a role for haploid selection

scientific article

Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence

scientific article published on 14 August 2015

The Evolution of Gene-Specific Transcriptional Noise Is Driven by Selection at the Pathway Level.

scientific article published on 2 November 2017

The WOPR Protein Ros1 Is a Master Regulator of Sporogenesis and Late Effector Gene Expression in the Maize Pathogen Ustilago maydis.

scientific article

The bonobo genome compared with the chimpanzee and human genomes

scientific article

The genomic determinants of adaptive evolution in a fungal pathogen

scientific article published on 01 May 2019

The insertion of a mitochondrial selfish element into the nuclear genome and its consequences

scientific article published on 31 August 2020

The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

scientific article published on 12 October 2011

hotspot: software to support sperm-typing for investigating recombination hotspots.

scientific article published on 13 April 2016

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