Search filters

List of works by John K. Colbourne

100 years of anthropogenic impact causes changes in freshwater functional biodiversity

A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex

scientific article published on 06 January 2020

A machine-learning approach to combined evidence validation of genome assemblies

scientific article

A microsatellite-based genetic linkage map of the waterflea, Daphnia pulex: On the prospect of crustacean genomics

scientific article published on 19 April 2006

A millennial-scale chronicle of evolutionary responses to cultural eutrophication in Daphnia.

scientific article

A mutation in the receptor Methoprene-tolerant alters juvenile hormone response in insects and crustaceans

scientific article

Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms

article

An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits

scientific article

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

scientific article

Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish

article

Centennial clonal stability of asexual <i>Daphnia</i> in Greenland lakes despite climate variability

scientific article published on 20 November 2020

Centennial clonal stability of asexual Daphnia in Greenland lakes despite climate variability

scientific article published on 24 July 2020

Characteristics of the genome of Arsenophonus nasoniae, son-killer bacterium of the wasp Nasonia

scientific article

Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation.

scientific article

Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia

scientific article published on June 2017

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

scientific article published on 10 May 2016

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

scientific article published on 31 January 2017

De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system.

scientific article

Differential transcriptomic responses of ancient and modern Daphnia genotypes to phosphorus supply.

scientific article published in January 2015

Dynamics of Cadmium Acclimation in Daphnia pulex: Linking Fitness Costs, Cross-Tolerance, and Hyper-Induction of Metallothionein

scientific article published on 02 December 2019

ESTPiper--a web-based analysis pipeline for expressed sequence tags

scientific article

Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.

scientific article

Ecological genomics in Daphnia: stress responses and environmental sex determination

scientific article published on 23 May 2007

Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii

scientific article

Evolutionary transition from blood feeding to obligate nonbiting in a mosquito

scientific article published on 18 December 2017

Fine-scale mapping of the Nasonia genome to chromosomes using a high-density genotyping microarray

scientific article published on February 2013

Function and evolution of DNA methylation in Nasonia vitripennis

scientific article

Functional characterization of four metallothionein genes in Daphnia pulex exposed to environmental stressors

scientific article published on 29 December 2011

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia

scientific article

Functional genomics of intraspecific variation in carbon and phosphorus kinetics in Daphnia

scientific article published on 17 May 2014

Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins

scientific article

Genome-wide transcription profiles reveal genotype-dependent responses of biological pathways and gene-families in Daphnia exposed to single and mixed stressors.

scientific article published on 26 February 2014

Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation

scientific article

Genomic data integration for ecological and evolutionary traits in non-model organisms

scientific article

Genomics in the ecological arena

scientific article published on 11 August 2010

Genomics of environmentally induced phenotypes in 2 extremely plastic arthropods.

scientific article

Gut pathology and responses to the microsporidium Nosema ceranae in the honey bee Apis mellifera

scientific article

Holarctic Phylogeography of an Asexual Species Complex I. Mitochondrial DNA Variation in Arctic Daphnia

article

How do consumers deal with stoichiometric constraints? Lessons from functional genomics using Daphnia pulex.

scientific article published on 26 April 2011

How omics technologies can enhance chemical safety regulation: perspectives from academia, government, and industry

scientific article published on 01 May 2018

Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum

scientific article published on 27 November 2012

Identification of pathways, gene networks, and paralogous gene families in Daphnia pulex responding to exposure to the toxic cyanobacterium Microcystis aeruginosa.

scientific article published on 25 July 2012

Improved Algal Toxicity Test System for Robust Omics-Driven Mode-of-Action Discovery in Chlamydomonas reinhardtii.

scientific article published on 10 May 2019

Ionotropic glutamate receptors mediate inducible defense in the water flea Daphnia pulex

scientific article

Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity

scientific article published on 01 March 2022

Male meiosis in Crustacea: synapsis, recombination, epigenetics and fertility in Daphnia magna

scientific article

Mitotic activity patterns and cytoskeletal changes throughout the progression of diapause developmental program in Daphnia

scientific article published on 29 December 2018

Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna

scientific article published on 17 January 2019

Molecular cloning of doublesex genes of four cladocera (water flea) species.

scientific article

Molecular evolution of daphnia immunity genes: polymorphism in a gram-negative binding protein gene and an alpha-2-macroglobulin gene

scientific article published in October 2004

Multigenerational Exposures of Daphnia Magna to Pristine and Aged Silver Nanoparticles: Epigenetic Changes and Phenotypical Ageing Related Effects

scientific article published on 27 April 2020

Multiple origins of pyrethroid insecticide resistance across the species complex of a nontarget aquatic crustacean, Hyalella azteca

scientific article published on 24 September 2013

Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes

scientific article

Novel Cadmium Responsive MicroRNAs in Daphnia pulex

scientific article published on 9 November 2015

OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

scientific article

Pattern of DNA Methylation in Daphnia: Evolutionary Perspective

scientific article published on 01 August 2018

Perfluoroalkyl Substances Stimulate Insulin Secretion by Islet β Cells via G Protein-Coupled Receptor 40

scientific article published on 05 March 2020

Phylogenetics and evolution of the Daphnia longispina group (Crustacea) based on 12S rDNA sequence and allozyme variation

scientific article

Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird

scientific article

Predator-induced defences in Daphnia pulex: selection and evaluation of internal reference genes for gene expression studies with real-time PCR

scientific article

Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex

scientific article

Rapid, local adaptation of zooplankton behavior to changes in predation pressure in the absence of neutral genetic changes

scientific article (publication date: 22 May 2001)

Recent advances in crustacean genomics.

scientific article published on 30 October 2008

Refining the evolutionary time machine: An assessment of whole genome amplification using single historical Daphnia eggs

scientific article published on 20 October 2021

Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes

scientific article

Scan, extract, wrap, compute—a 3D method to analyse morphological shape differences.

scientific article

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

scientific article

Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis

scientific article published on 27 January 2020

Spatio-temporal processes drive fine-scale genetic structure in an otherwise panmictic seabird population

scientific article published on 26 November 2020

Synergistic interactions of biotic and abiotic environmental stressors on gene expression.

scientific article

Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing

scientific article

Testosterone affects neural gene expression differently in male and female juncos: a role for hormones in mediating sexual dimorphism and conflict

scientific article

The Quantitative and Molecular Genetic Architecture of a Subdivided Species

article

The Role of Omics in the Application of Adverse Outcome Pathways for Chemical Risk Assessment

scientific article

The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology

scientific article published on 10 April 2018

The components of the Daphnia pulex immune system as revealed by complete genome sequencing

scientific article

The draft genome sequence of Arsenophonus nasoniae, son-killer bacterium of Nasonia vitripennis, reveals genes associated with virulence and symbiosis

scientific article

The ecoresponsive genome of Daphnia pulex

scientific article

The evolution of salinity tolerance in Daphnia: a functional genomics approach

scientific article published on 15 May 2012

The evolutionary time machine: using dormant propagules to forecast how populations can adapt to changing environments

scientific article (publication date: May 2013)

The genome of the green anole lizard and a comparative analysis with birds and mammals ⬇️

scientific article

The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish ⬇️

scientific article

The landscape of extreme genomic variation in the highly adaptable Atlantic killifish

scientific article published on 13 February 2017

The scale of divergence: a phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus

scientific article

The systematics of North American Daphnia (Crustacea: Anomopoda): a molecular phylogenetic approach.

scientific article published on March 1996

The transcriptomic and proteomic responses of Daphnia pulex to changes in temperature and food supply comprise environment-specific and clone-specific elements.

scientific article

The unusually long small-subunit ribosomal RNA of the crustacean, Daphnia pulex: sequence and predicted secondary structure.

scientific article

Thermal variation and factors influencing vertical migration behavior in Daphnia populations

scientific article

Transcription patterns of genes encoding four metallothionein homologs in Daphnia pulex exposed to copper and cadmium are time- and homolog-dependent

scientific article published on 23 September 2013

Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions

scientific article

Transgenerational response to early spring warming in Daphnia

article

Vision of a near future: Bridging the human health-environment divide. Toward an integrated strategy to understand mechanisms across species for chemical safety assessment

scientific article published on 25 October 2019

Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum

scientific article (publication date: 27 February 2013)

Paulina is supported by:

About Paulina

Help