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Authors whose works are in public domain in at least one jurisdiction

List of works by Nick Goldman

51-100 of 119 results

Experimental design criteria in phylogenetics: where to add taxa

scientific article published in August 2007

Simple diagnostic statistical tests of models for DNA substitution

scientific article published in December 1993

Pandit: a database of protein and associated nucleotide domains with inferred trees

scientific article published in August 2003

A model of evolution and structure for multiple sequence alignment

scientific article published on December 2008

Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment.

scientific article

A penalized-likelihood method to estimate the distribution of selection coefficients from phylogenetic data

scientific article (publication date: May 2014)

The human blood DNA methylome displays a highly distinctive profile compared with other somatic tissues.

scientific article published on January 2015

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment

scientific article

Phylogenomics and bioinformatics of SARS-CoV.

scientific article published on March 2004

Species choice for comparative genomics: being greedy works

scientific article

Phylogenetic analysis of the rpoB gene from the plastid-like DNA of Plasmodium falciparum

scientific article published in August 1994

Looking for Darwin in genomic sequences--validity and success of statistical methods

scientific article published on 3 April 2012

Further results on error minimization in the genetic code

scientific article published on 01 December 1993

All Your Base: a fast and accurate probabilistic approach to base calling

scientific article

PASSML: combining evolutionary inference and protein secondary structure prediction

scientific article published on January 1, 1998

Clustering Genes of Common Evolutionary History

scientific article published on 17 February 2016

Using protein structural information in evolutionary inference: transmembrane proteins

scientific article published in December 1999

Addressing Inter-Gene Heterogeneity in Maximum Likelihood Phylogenomic Analysis: Yeasts Revisited

scientific article published on August 5, 2011

Uniting Alignments and Trees

scientific article

Variance to mean ratio, R(t), for poisson processes on phylogenetic trees

scientific article published in September 1994

Determination and validation of principal gene products

scientific article

A new criterion and method for amino acid classification

scientific article published in May 2004

Evidence for mitochondrial DNA recombination in a human population of island Melanesia: correction

article

Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks.

scientific article published on 6 January 2015

Effects of sequence alignment procedures on estimates of phylogeny

article

Maximum likelihood inference of small trees in the presence of long branches.

scientific article published on 4 July 2014

EDIBLE: experimental design and information calculations in phylogenetics

scientific article published on 01 March 2000

Resource-aware taxon selection for maximizing phylogenetic diversity

scientific article published in June 2007

Markovian and non-Markovian protein sequence evolution: aggregated Markov process models

scientific article published on 21 June 2011

Rapidly evolving human promoter regions

scientific article published in November 2008

More on the Best Evolutionary Rate for Phylogenetic Analysis

scientific article

Human origins. Genetics and geography

scientific article

Alignment modulates ancestral sequence reconstruction accuracy

scientific article published on 3 April 2018

Human immunodeficiency virus type 2 (HIV-2) env gene analysis: prediction of glycoprotein epitopes important for heterotypic neutralization and evidence for three genotype clusters within the HIV-2a subtype

scientific article

Are big trees indeed easy?

scientific article published in August 1997

What's in a likelihood? Simple models of protein evolution and the contribution of structurally viable reconstructions to the likelihood

scientific article

Error-correcting properties of the SOLiD Exact Call Chemistry

scientific article

Short template switch events explain mutation clusters in the human genome

scientific article

Introduction. Statistical and computational challenges in molecular phylogenetics and evolution

scientific article (publication date: 27 December 2008)

Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments, with or without Gaps

scientific article

Sequence Bundles: a novel method for visualising, discovering and exploring sequence motifs

scientific article

[Evaluation and extension of Markov process models for the evolution of DNA]

article

Statistics of the log-det estimator

scientific article published on 16 August 2007

An improved protocol for sequencing of repetitive genomic regions and structural variations using mutagenesis and next generation sequencing

scientific article

Modeling Mitochondrial Protein Evolution Using Structural Information

Modeling Structural Constraints on Protein Evolution via Side-Chain Conformational States

scientific article published on 01 September 2019

Improving communication for interdisciplinary teams working on storage of digital information in DNA.

scientific article published on 10 January 2018

Fewest Variables Coding Method for Multistate Characters

article published in 1989

Genomic reconstruction of the SARS-CoV-2 epidemic in England

scientific article

Stability of SARS-CoV-2 phylogenies

scientific article published on 18 November 2020