List of works by Mikkel Heide Schierup

A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion

scientific article published on 4 November 2013

A genomic history of Aboriginal Australia

scientific article (publication date: 21 September 2016)

A global catalog of whole-genome diversity from 233 primate species

A high-coverage Neandertal genome from Vindija Cave in Croatia.

scientific article published on 5 October 2017

A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species

scientific article (publication date: 2012)

An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes

scientific article

Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

scientific article published on 28 August 2017

Ancestral population genomics: the coalescent hidden Markov model approach

scientific article published on 06 July 2009

Assembly and analysis of 100 full MHC haplotypes from the Danish population

scientific article published on 03 August 2017

Association mapping and disease: evolutionary perspectives.

scientific article published on January 2012

Author Correction: Comparative and demographic analysis of orang-utan genomes

correction of a scholarly article

Author Correction: Direct estimation of mutations in great apes reconciles phylogenetic dating

scientific article published on 01 May 2019

Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover

scientific article published on 25 April 2019

Characterization of the 2'-5'-oligoadenylate synthetase ubiquitin-like family

scientific article

CoaSim: a flexible environment for simulating genetic data under coalescent models

scientific article

Comparative analysis of protein coding sequences from human, mouse and the domesticated pig

scientific article

Comparative and demographic analysis of orang-utan genomes

scientific article

Complexity of avian evolution revealed by family-level genomes

scientific article published in April 2024

Corrigendum: Spider genomes provide insight into composition and evolution of venom and silk

scientific article published on 6 August 2014

DNA Topoisomerases maintain promoters in a state competent for transcriptional activation in Saccharomyces cerevisiae

scientific article

Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions

scientific article published on 26 June 2016

Different historical generation intervals in human populations inferred from Neanderthal fragment lengths and mutation signatures

scientific article published on 07 September 2021

Direct estimation of mutations in great apes reconciles phylogenetic dating

scientific article published on 21 January 2019

Direct estimation of mutations in great apes reveals significant recent human slowdown in the yearly mutation rate

Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model

scientific article

Estimating the number, frequency, and dominance of S-alleles in a natural population of Arabidopsis lyrata(Brassicaceae) with sporophytic control of self-incompatibility

scientific article published in June 2003

Evaluating genetic causes of azoospermia: What can we learn from a complex cellular structure and single-cell transcriptomics of the human testis?

scientific article published on 16 January 2020

Evidence for Adaptive Introgression of Disease Resistance Genes Among Closely Related Arabidopsis Species

scientific article published on 19 June 2017

Evidence of recombination among early-vaccination era measles virus strains

scientific article

Evidence that the rate of strong selective sweeps increases with population size in the great apes

scientific article

Expression of distinct self-incompatibility specificities in Arabidopsis thaliana

scientific article

Extensive X-linked adaptive evolution in central chimpanzees

scientific article published on 23 January 2012

Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan

scientific article published on 14 January 2020

Extreme selective sweeps independently targeted the X chromosomes of the great apes

scientific article published on 4 May 2015

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species

scientific article

GeneRecon--a coalescent based tool for fine-scale association mapping.

scientific article published on 21 April 2006

Genomic consequences of selection on self-incompatibility genes.

scientific article published on 07 March 2008

Genomic determinants of protein evolution and polymorphism in Arabidopsis.

scientific article published on 16 September 2011

Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model

scientific article

Great ape genetic diversity and population history

scientific article published on 03 July 2013

Haplotype Structure of the Stigmatic Self-Incompatibility Gene in Natural Populations of Arabidopsis lyrata

article

Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups

scientific article

Heterogeneity in regional GC content and differential usage of codons and amino acids in GC-poor and GC-rich regions of the genome of Apis mellifera

scientific article

High-resolution genetic maps of Lotus japonicus and L. burttii based on re-sequencing of recombinant inbred lines.

scientific article published on 03 July 2016

Identifying disease associated genes by network propagation.

scientific article

Incomplete lineage sorting and phenotypic evolution in marsupials

scientific article published in 2022

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

scientific article (publication date: March 2011)

Increased rate of human mutations where DNA and RNA polymerases collide.

scientific article published on 23 October 2009

Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing

scientific article published on 30 March 2015

Inferring the Process of Human-Chimpanzee Speciation

article published in 2014

Insertion and deletion processes in recent human history

scientific article

Insights into hominid evolution from the gorilla genome sequence

scientific article

Lineage sorting in apes

scientific article published on 19 September 2014

Local phylogeny mapping of quantitative traits: higher accuracy and better ranking than single-marker association in genomewide scans

scientific article published on 8 December 2008

Long-chain n-3 and n-6 polyunsaturated fatty acids and risk of atrial fibrillation: Results from a Danish cohort study.

scientific article published on 22 December 2017

Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua).

scientific article published on February 2006

MATE AVAILABILITY AND FECUNDITY SELECTION IN MULTI-ALLELIC SELF-INCOMPATIBILITY SYSTEMS IN PLANTS.

scientific article

Microsatellite analyses reveal fine-scale genetic structure in grey mouse lemurs (Microcebus murinus).

scientific article published on July 2005

Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores

scientific article

Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores

Molecular evolution within and between self-incompatibility specificities.

scientific article published on January 2010

Nationwide Genomic Study in Denmark Reveals Remarkable Population Homogeneity

scientific article

Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios ⬇️

scientific article

Orthologous genes identified by transcriptome sequencing in the spider genus Stegodyphus

scientific article (publication date: 14 February 2012)

Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing

scientific article

RNA exosome depletion reveals transcription upstream of active human promoters

scientific article

Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck

scientific article

Recombination in Mycoplasma hominis.

scientific article published on July 2002

Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus

scientific article published on 01 October 2003

Repeated adaptive introgression at a gene under multiallelic balancing selection

scientific article

SOAPindel: efficient identification of indels from short paired reads

scientific article

Selection at work in self-incompatible Arabidopsis lyrata: mating patterns in a natural population

scientific article

Selective Sweeps across Twenty Millions Years of Primate Evolution

scientific article published on 22 September 2016

Sequence analysis of measles virus strains collected during the pre- and early-vaccination era in Denmark reveals a considerable diversity of ancient strains

scientific article published in February 2002

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

scientific article published in Nature

Spider genomes provide insight into composition and evolution of venom and silk

scientific article

Spitting for Science: Danish High School Students Commit to a Large-Scale Self-Reported Genetic Study

scientific article

Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence

scientific article published on 14 August 2015

The Icelandic Cancer Project--a population-wide approach to studying cancer

scientific article published in June 2004

The bonobo genome compared with the chimpanzee and human genomes

scientific article

The comparative genomics and complex population history of baboons

scientific article published on 30 January 2019

The effect of hitch-hiking on genes linked to a balanced polymorphism in a subdivided population

article

The effect of subdivision on variation at multi-allelic loci under balancing selection

scientific article published on 01 August 2000

The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers

scientific article published on 31 May 2006

The landscape of tolerated genetic variation in humans and primates

The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

scientific article published on 12 October 2011

The nature of Neanderthal introgression revealed by 27,566 Icelandic genomes

scientific article published on 22 April 2020

The transition to self-compatibility in Arabidopsis thaliana and evolution within S-haplotypes over 10 Myr.

scientific article published on 16 June 2006

Transcriptome analysis of the response of Burmese python to digestion.

scientific article published on August 2017

Transcriptome profiling of fetal Klinefelter testis tissue reveals a possible involvement of long non-coding RNAs in gonocyte maturation

scientific article published on 24 November 2017

Transmission ratio distortion in Arabidopsis lyrata: effects of population divergence and the S-locus

article

Uneven segregation of sporophytic self-incompatibility alleles in Arabidopsis lyrata

scientific article published on 01 May 2004

Unraveling recombination rate evolution using ancestral recombination maps

scientific article

Using biological networks to search for interacting loci in genome-wide association studies

scientific article published on 11 March 2009

Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population

scientific article published on 22 January 2014

When gametophytic self-incompatibility meets gynodioecy.

scientific article published in February 2008

Whole genome association mapping by incompatibilities and local perfect phylogenies

scientific article

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

Worldwide Late Pleistocene and Early Holocene population declines in extant megafauna are associated with Homo sapiens expansion rather than climate change

scientific article published on 24 November 2023

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