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List of works by Brant C. Faircloth

A Highly Contiguous Reference Genome for Northern Bobwhite (Colinus virginianus)

scientific article published on 03 December 2019

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)

scientific article

A Target Enrichment Bait Set for Studying Relationships among Ostariophysan Fishes

scientific article published on 5 February 2020

A phylogenomic analysis of turtles ⬇️

scientific article

A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean

scientific article published on 11 September 2019

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

scientific article published in 2013

Adapterama I: Universal stubs and primers for thousands of dual-indexed Illumina libraries (iTru & iNext)

Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)

scientific article published on 11 October 2019

Adapterama II: universal amplicon sequencing on illumina platforms (TaggiMatrix)

journal article published in 2019

Adapterama III: Quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD)

scientific article published on 11 October 2019

Adapterama IV: Sequence Capture of Dual-digest RADseq Libraries with Identifiable Duplicates (RADcap)

Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods.

scientific article published on 10 February 2016

Author Correction: Dense sampling of bird diversity increases power of comparative genomics

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes).

scientific article

Capturing Darwin's dream

scientific article

Comparison of ultraconserved elements (UCEs) to microsatellite markers for the study of avian hybrid zones: a test in Aphelocoma jays

scientific article published on 24 July 2019

Complexity of avian evolution revealed by family-level genomes

scientific article published in April 2024

Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats.

scientific article

Dense sampling of bird diversity increases power of comparative genomics

scientific article published on 11 November 2020

Developing a community-based genetic nomenclature for anole lizards

scientific article

Development and characterization of microsatellite loci for common raven (Corvus corax) and cross species amplification in other Corvidae

scientific article published on 6 November 2015

Development and characterization of microsatellite loci for two species of Beringian birds, rock sandpiper (Calidris ptilocnemis) and Pacific wren (Troglodytes pacificus)

Divergence, gene flow, and speciation in eight lineages of trans-Beringian birds

scientific article published on 03 August 2020

Dry habitats were crucibles of domestication in the evolution of agriculture in ants.

scientific article published in April 2017

Earth history and the passerine superradiation

scientific article published on 01 April 2019

Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary

scientific article published on 12 March 2018

Extensive paraphyly in the typical owl family (Strigidae)

scientific article (publication date: 2 January 2020)

Genome assemblies for two Neotropical trees: <i>Jacaranda copaia</i> and <i>Handroanthus guayacan</i>

scientific article published in 2021

Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird

Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird

scientific article published on 21 December 2018

Genome-wide ultraconserved elements exhibit higher phylogenetic informativeness than traditional gene markers in percomorph fishes

scientific article published on 12 June 2015

Habitat structure and colony structure constrain extrapair paternity in a colonial bird

Hidden histories of gene flow in highland birds revealed with genomic markers

scientific article

High phylogenetic utility of an ultraconserved element probe set designed for Arachnida

scientific article

Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

scientific article

Implications of headwater contact zones for the riverine barrier hypothesis: a case study of the Blue-capped Manakin (<i>Lepidothrix coronata</i>)

scientific article published on 20 October 2023

Incongruence among different mitochondrial regions: a case study using complete mitogenomes.

scientific article

Insight from an Ultraconserved Element Bait Set Designed for Hemipteran Phylogenetics Integrated with Genomic Resources

scholarly article by Troy J Kieran published in October 2018

Interactive effects of male and female age on extra-pair paternity in a socially monogamous seabird

scientific article published in 2014

Microsatellite markers for eastern hemlock (Tsuga canadensis).

scientific article

More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs ⬇️

scientific article

Next-generation phylogenetics takes root

scientific article published in January 2013

Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels ⬇️

scientific article published on August 10, 2012

PHYLUCE is a software package for the analysis of conserved genomic loci

scientific article published on 2 November 2015

Phylogenetic relationships of diurnal, phytotelm-breeding Melanophryniscus (Anura: Bufonidae) based on mitogenomic data.

scientific article published on 15 July 2017

Phylogenomic Systematics of Ostariophysan fishes: Ultraconserved Elements Support the Surprising Non-monophyly of Characiformes

scientific article

Phylogenomic analyses data of the avian phylogenomics project

scientific article

Phylogenomic analysis of Lake Malawi cichlid fishes: Further evidence that the three-stage model of diversification does not fit.

scientific article

Phylogenomic analysis of a rapid radiation of misfit fishes (Syngnathiformes) using ultraconserved elements

scientific article

Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye

scientific article

Phylogenomic species delimitation in microendemic frogs of the Brazilian Atlantic Forest

scientific article published on 17 September 2019

Primer3--new capabilities and interfaces

scientific article (publication date: August 2012)

Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous

scientific article published in 2022

RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data

scientific article

Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest.

scientific article published on 16 October 2015

Replicated divergence in cichlid radiations mirrors a major vertebrate innovation

scientific article

Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting

scientific article published on 01 July 2019

Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics

scientific article

Sequence capture of ultraconserved elements from bird museum specimens

scientific article published on 22 September 2015

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

scientific article

Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database

scientific article published on 17 October 2013

Speciation in Western Scrub-Jays, Haldane's rule, and genetic clines in secondary contact

scientific article

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

scientific article

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera

scientific article

Tectonic collision and uplift of Wallacea triggered the global songbird radiation

scientific article

Tetranucleotide microsatellite loci from the black bear (Ursus americanus)

scientific article published on 10 November 2008

The critical importance of vouchers in genomics

scientific article published on 01 June 2021

The drivers of tropical speciation

scientific article

The evolution of a tropical biodiversity hotspot

scientific article

The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach.

scientific article published in September 2014

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

scientific article

Translocation to a fragmented landscape: survival, movement, and site fidelity of Northern Bobwhites

scientific article

Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event

scientific article published on 05 October 2018

Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event

Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

scientific article

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

scientific article (publication date: April 2012)

Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems.

scientific article

Use of sonic tomography to detect and quantify wood decay in living trees.

scientific article

Using UCEs to track the influence of sea-level change on leafy seadragon populations

scientific article published on 20 November 2020

What are the roles oftaxon sampling and model fit in tests ofcyto-nuclear discordance using avian mitogenomic data?

scientific article published on 12 October 2018

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

Widespread sympatry in a species-rich clade of marine fishes (Carangoidei)

msatcommander: detection of microsatellite repeat arrays and automated, locus‐specific primer design ⬇️

scientific article published on January 1, 2008

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