List of works - Christina A Cuomo

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

scientific article

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

scientific article

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

scientific article

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

scientific article

Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two steps

scientific article published in November 1995

DNA-dependent kinase (p350) as a candidate gene for the murine SCID defect

scientific article

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

scientific article

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

scientific article

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

scientific article

Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses

scientific article

Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens

scientific article

Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication

scientific article

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation

scientific article

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.

scientific article

Genomics of the fungal kingdom: insights into eukaryotic biology

scientific article

Rch1, a protein that specifically interacts with the RAG-1 recombination-activating protein

scientific article

Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection

scientific article

Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.

scientific article

Genetic and phenotypic intra-species variation in Candida albicans

scientific article published in March 2015

Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes

scientific article

Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade

scientific article published on 31 July 2012

Analysis of regions of RAG-2 important for V(D)J recombination

scientific article published on May 1994

DNA sequence and structure requirements for cleavage of V(D)J recombination signal sequences

scientific article published on October 1996

Comparative proteomics of extracellular proteinsin vitro andin planta from the pathogenic fungusFusarium graminearum

article

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis

scientific article

The evolution of drug resistance in clinical isolates of Candida albicans

scientific article

The Case for Adopting the "Species Complex" Nomenclature for the Etiologic Agents of Cryptococcosis

scientific article (publication date: 11 January 2017)

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

scientific article

The breakpoint region of the most common isochromosome, i(17q), in human neoplasia is characterized by a complex genomic architecture with large, palindromic, low-copy repeats

scientific article

Ubiquitin-mediated response to microsporidia and virus infection in C. elegans

scientific article (publication date: June 2014)

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use.

scientific article published in May 2013

Approaches to Fungal Genome Annotation

scientific article (publication date: 3 October 2011)

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

scientific article published on 22 February 2016

DNA sequence and analysis of human chromosome 8

scientific article

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

scientific article

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

scientific article published on 29 March 2018

Analysis of the DNA sequence and duplication history of human chromosome 15

scientific article

Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans

scientific article

Contrasting host-pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes

scientific article published on 13 May 2015

Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae.

scientific article

Analysis of a food-borne fungal pathogen outbreak: virulence and genome of a Mucor circinelloides isolate from yogurt

scientific article

Highly recombinant VGII Cryptococcus gattii population develops clonal outbreak clusters through both sexual macroevolution and asexual microevolution

scientific article

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi

scientific article

SREB, a GATA transcription factor that directs disparate fates in Blastomyces dermatitidis including morphogenesis and siderophore biosynthesis

scientific article

Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).

scientific article published on 27 January 2017

Fungi on the skin: dermatophytes and Malassezia

scientific article

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

scientific article published in Nature Communications

Human chromosome 11 DNA sequence and analysis including novel gene identification

scientific article

Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales).

scientific article

The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia

scientific article published on 6 October 2015

List of works by Christina A Cuomo

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two steps

DNA-dependent kinase (p350) as a candidate gene for the murine SCID defect

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses

Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens

Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.

Genomics of the fungal kingdom: insights into eukaryotic biology

Rch1, a protein that specifically interacts with the RAG-1 recombination-activating protein

Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection

Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.

Genetic and phenotypic intra-species variation in Candida albicans

Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes

Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade

Analysis of regions of RAG-2 important for V(D)J recombination

DNA sequence and structure requirements for cleavage of V(D)J recombination signal sequences

Comparative proteomics of extracellular proteinsin vitro andin planta from the pathogenic fungusFusarium graminearum

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis

The evolution of drug resistance in clinical isolates of Candida albicans

The Case for Adopting the "Species Complex" Nomenclature for the Etiologic Agents of Cryptococcosis

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

The breakpoint region of the most common isochromosome, i(17q), in human neoplasia is characterized by a complex genomic architecture with large, palindromic, low-copy repeats

Ubiquitin-mediated response to microsporidia and virus infection in C. elegans

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use.

Approaches to Fungal Genome Annotation

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

DNA sequence and analysis of human chromosome 8

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

Analysis of the DNA sequence and duplication history of human chromosome 15

Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans

Contrasting host-pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes

Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae.

Analysis of a food-borne fungal pathogen outbreak: virulence and genome of a Mucor circinelloides isolate from yogurt

Highly recombinant VGII Cryptococcus gattii population develops clonal outbreak clusters through both sexual macroevolution and asexual microevolution

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi

SREB, a GATA transcription factor that directs disparate fates in Blastomyces dermatitidis including morphogenesis and siderophore biosynthesis

Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).

Fungi on the skin: dermatophytes and Malassezia

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

Human chromosome 11 DNA sequence and analysis including novel gene identification

Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales).

The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia