Search filters

List of works by David A Fitzpatrick

A comparative study of the molecular evolution of signalling pathway members across olfactory, gustatory and photosensory modalities

scientific article published on 01 January 2013

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

scientific article

A pluralistic account of homology: adapting the models to the data ⬇️

scientific article

A role for the Parkinson's disease protein DJ-1 as a chaperone and antioxidant in the anhydrobiotic nematode Panagrolaimus superbus

scientific article

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser

scientific article

Antibiotic resistance genes across a wide variety of metagenomes.

scientific article published on 5 January 2016

Assessment of inactivating stop codon mutations in forty Saccharomyces cerevisiae strains: implications for [PSI] prion- mediated phenotypes

scientific article

Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

article

Comparative Analysis of Oomycete Genome Evolution Using the Oomycete Gene Order Browser (OGOB)

article

Comparative Genomic and Proteomic Analyses of Three Widespread Phytophthora Species: Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae

scientific article published on 30 April 2020

Control of Development, Secondary Metabolism and Light-Dependent Carotenoid Biosynthesis by the Velvet Complex of Neurospora crassa

scientific article published on 08 May 2019

Different outcomes for the MYB floral symmetry genes DIVARICATA and RADIALIS during the evolution of derived actinomorphy in Plantago

scientific article published on 27 January 2014

Emergence and evolution of yeast prion and prion-like proteins

scientific article published on 25 January 2016

Epidemiological and virological investigations of equine influenza outbreaks in Ireland (2010-2012).

scientific article published on December 2013

Evaluation of Whether Accelerated Protein Evolution in Chordates Has Occurred before, after, or Simultaneously with Gene Duplication

article

Evidence of positive Darwinian selection in Omp85, a highly conserved bacterial outer membrane protein essential for cell viability

scientific article published on 01 February 2005

Evidence of positive Darwinian selection in putative meningococcal vaccine antigens

scientific article published on 29 June 2005

Evolution of flower shape in Plantago lanceolata

scientific article published on 11 July 2009

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

scientific article

Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi

article

Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication

scientific article published on 13 August 2003

Gene and genome trees conflict at many levels.

scientific article

Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae (CTG-Ser) clade.

scientific article published on 26 June 2018

Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

article

Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling

scientific article

Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system

scientific article published on 28 May 2013

Genomic, Network, and Phylogenetic Analysis of the Oomycete Effector Arsenal.

scientific article

Global transcript and phenotypic analysis of yeast cells expressing Ssa1, Ssa2, Ssa3 or Ssa4 as sole source of cytosolic Hsp70-Ssa chaperone activity

scientific article

Horizontal gene transfer in fungi

scientific article published on 15 December 2011

Insight into the family of Na+/Ca2+ exchangers of Caenorhabditis elegans

scientific article published on 26 July 2013

Insights into the transcriptomic response of the plant engineering bacterium Ensifer adhaerens OV14 during transformation

scientific article published on 17 July 2019

Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus

scientific article published on 6 July 2015

Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network

scientific article

Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species

scientific article published on 3 February 2009

Metabolic responses of two pioneer wood decay fungi to diurnally cycling temperature

scientific article

Molecular characterization of an adaptive response to alkylating agents in the opportunistic pathogen Aspergillus fumigatus

scientific article (publication date: September 2012)

Multiple Approaches to Phylogenomic Reconstruction of the Fungal Kingdom

scientific article

Multiple lineage specific expansions within the guanylyl cyclase gene family

scientific article published on 20 March 2006

Novel primers for the amplification of nuclear DNA introns in the entomopathogenic nematode Heterorhabditis bacteriophora and their cross-amplification in seven other Heterorhabditis species

scientific article published in January 2009

Pan-genome analyses of model fungal species

scientific article published on 04 February 2019

Pangloss: A Tool for Pan-Genome Analysis of Microbial Eukaryotes

scientific article published on 10 July 2019

Proteome and allergenome of the European house dust mite Dermatophagoides pteronyssinus

scientific article published on 01 May 2019

Proteomic Characterization of Armillaria mellea Reveals Oxidative Stress Response Mechanisms and Altered Secondary Metabolism Profiles

scientific article published on 17 September 2017

RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus

scientific article

Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

scientific article

Regulation of nonribosomal peptide synthesis: bis-thiomethylation attenuates gliotoxin biosynthesis in Aspergillus fumigatus

scientific article published on August 2014

Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages.

scientific article published on 14 September 2016

The anhydrobiotic potential and molecular phylogenetics of species and strains of Panagrolaimus (Nematoda, Panagrolaimidae).

scientific article published in June 2005

The copper regulon of the human fungal pathogen Cryptococcus neoformans H99.

scientific article published on 23 August 2011

The effect of entomopathogenic fungal culture filtrate on the immune response and haemolymph proteome of the large pine weevil, Hylobius abietis

scientific article published on 17 July 2018

The evolutionary history of the genes involved in the biosynthesis of the antioxidant ergothioneine

scientific article published on 26 July 2014

The involvement of the low-oxygen-activated locus of Burkholderia cenocepacia in adaptation during cystic fibrosis infection

scientific article published in Scientific Reports

The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes

scientific article published on 16 June 2006

Universally distributed single-copy genes indicate a constant rate of horizontal transfer

scientific article

Whole Genome Sequence of the Commercially Relevant Mushroom Strain Agaricus bisporus var. bisporus ARP23

scientific article published on 07 October 2019

Paulina is supported by:

About Paulina

Help