Search filters

Authors whose works are in public domain in at least one jurisdiction

List of works by James C. Carrington

5' proximal potyviral sequences mediate potato virus X/potyviral synergistic disease in transgenic tobacco

scientific article

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria

scientific article published on 19 June 2015

A uniform system for microRNA annotation

scientific article

AGO1-miR173 complex initiates phased siRNA formation in plants

scholarly article

ARGONAUTE PIWI domain and microRNA duplex structure regulate small RNA sorting in Arabidopsis

scientific article

ASRP: the Arabidopsis Small RNA Project Database

scientific article

Activation and suppression of RNA silencing by plant viruses

scientific article

Antiviral ARGONAUTEs Against Turnip Crinkle Virus Revealed by Image-Based Trait Analysis

scientific article published on 01 May 2019

Antiviral roles of plant ARGONAUTES

scientific article

Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection

scientific article

Arabidopsis RTM1 and RTM2 genes function in phloem to restrict long-distance movement of tobacco etch virus

scientific article published in December 2001

Arabidopsis RTM2 gene is necessary for specific restriction of tobacco etch virus and encodes an unusual small heat shock-like protein

scientific article published in April 2000

Biologically active cymbidium ringspot virus satellite RNA in transgenic plants suppresses accumulation of DI RNA.

scientific article published in June 1992

CG gene body DNA methylation changes and evolution of duplicated genes in cassava

scientific article

Capsid protein determinants involved in cell-to-cell and long distance movement of tobacco etch potyvirus

scientific article

Characterization of the potyviral HC-pro autoproteolytic cleavage site

scientific article published on 01 March 1992

Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA

scientific article (publication date: 20 September 2002)

Climate change and the integrity of science

scientific article

Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement of tobacco etch virus

scientific article published on January 2000

Complementation of tobacco etch potyvirus mutants by active RNA polymerase expressed in transgenic cells

scientific article

Computational and analytical framework for small RNA profiling by high-throughput sequencing

scientific article published on 23 March 2009

Control of leaf morphogenesis by microRNAs

scientific article (publication date: 18 September 2003)

Criteria for annotation of plant MicroRNAs

scientific article published on 12 December 2008

DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana

scientific article

Differential response of cassava genotypes to infection by cassava mosaic geminiviruses

scientific article published on 29 September 2016

Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline

scientific article published on October 2009

Distinct expression patterns of natural antisense transcripts in Arabidopsis

scientific article published in 2007

Diverse suppressors of RNA silencing enhance agroinfection by a viral replicon

scientific article published on 21 November 2005

Evolution and functional diversification of MIRNA genes

scientific article

Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana

scientific article

Expression of Arabidopsis MIRNA genes

scientific article published on 22 July 2005

Formation of complexes at plasmodesmata for potyvirus intercellular movement is mediated by the viral protein P3N-PIPO.

scientific article

Formation of plant RNA virus replication complexes on membranes: role of an endoplasmic reticulum-targeted viral protein

scientific article

Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants

scientific article published on 28 September 2012

Functional dissection of the ARGONAUTE7 promoter

scientific article published on 02 January 2019

GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.

scientific article

Genetic and functional diversification of small RNA pathways in plants

scientific article

Genetic evidence for an essential role for potyvirus CI protein in cell-to-cell movement

scientific article published in May 1998

Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis

scientific article (publication date: May 2010)

Genome Streamlining in a Cosmopolitan Oceanic Bacterium

scientific article

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

scientific article

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome studies and molecular geneticsThe consequences of gene and genome duplication in plants

scientific article published on 01 April 2005

Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting

article

Genome-wide profiling and analysis of Arabidopsis siRNAs

scientific article (publication date: March 2007)

Genome-wide profiling of populus small RNAs

scientific article

Hiding in plain sight: New virus genomes discovered via a systematic analysis of fungal public transcriptomes

scientific article published on 24 July 2019

Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense.

scientific article published in June 2006

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

scientific article (publication date: 14 February 2007)

Highlights from the ninth international congress on molecular plant-microbe interactions

scientific article

Highly specific gene silencing in a monocot species by artificial microRNAs derived from chimeric miRNA precursors

scientific article published on 24 March 2015

Host-specific involvement of the HC protein in the long-distance movement of potyviruses

scientific article published on February 2002

Identification and characterization of a locus (RTM1) that restricts long-distance movement of tobacco etch virus in Arabidopsis thaliana

scientific article

Identification and characterization of human cytomegalovirus-encoded microRNAs

scientific article

Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing

scientific article (publication date: 5 January 2010)

Identification of essential residues in potyvirus proteinase HC-Pro by site-directed mutagenesis

scientific article

Identification of genes required for de novo DNA methylation in Arabidopsis

scientific article

Long-distance movement and replication maintenance functions correlate with silencing suppression activity of potyviral HC-Pro

scientific article published in June 2001

Long-distance movement factor: a transport function of the potyvirus helper component proteinase

article by S Cronin et al published May 1995 in The Plant Cell

Loss of CMD2-mediated resistance to cassava mosaic disease in plants regenerated through somatic embryogenesis

scientific article published on 10 December 2015

Loss-of-Susceptibility Mutants of Arabidopsis thaliana Reveal an Essential Role for eIF(iso)4E during Potyvirus Infection

scientific article published on 01 June 2002

MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana

scientific article published on 20 April 2010

Moving targets

scientific article published in Nature

Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins

scientific article published on December 2008

Mutational analysis of the tobacco etch potyviral 35-kDa proteinase: identification of essential residues and requirements for autoproteolysis

scientific article published on September 1992

Mutations in the region encoding the central domain of helper component-proteinase (HC-Pro) eliminate potato virus X/potyviral synergism

scientific article published in April 1997

NIa and NIb of Peanut Stripe Potyvirus Are Present in the Nucleus of Infected Cells, but Do Not Form Inclusions

scientific article published on 01 October 1996

Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation

scientific article published in April 2003

New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis.

scientific article published on 19 March 2014

Nuclear Transport of Tobacco Etch Potyviral RNA-Dependent RNA Polymerase Is Highly Sensitive to Sequence Alterations

scientific article published on 01 April 1993

Nucleotide sequence and genome organization of carnation mottle virus RNA.

scientific article

P-SAMS: a web site for plant artificial microRNA and synthetic trans-acting small interfering RNA design

scientific article

P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction

scientific article published in February 2003

PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans

scientific article published on 19 June 2008

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

scientific article

Pattern formation via small RNA mobility.

scientific article published on March 2009

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs

scientific article (publication date: 2013)

Plant Viral Synergism: The Potyviral Genome Encodes a Broad-Range Pathogenicity Enhancer That Transactivates Replication of Heterologous Viruses

article

Preparation of Multiplexed Small RNA Libraries From Plants

scientific article published in November 2014

RNA Binding Activity of NIa Proteinase of Tobacco Etch Potyvirus

scientific article published on 01 October 1997

RNA silencing genes control de novo DNA methylation

scientific article published in February 2004

RTM3, which controls long-distance movement of potyviruses, is a member of a new plant gene family encoding a meprin and TRAF homology domain-containing protein.

scientific article published on 28 June 2010

Raspberry Pi Powered Imaging for Plant Phenotyping

article

Regulation and functional specialization of small RNA-target nodes during plant development

scientific article published on 19 August 2009

Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis

scientific article

Reinventing plant virus movement

scientific article published in August 1999

Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages

scientific article (publication date: October 2007)

Requirement for HC-Pro processing during genome amplification of tobacco etch potyvirus

scientific article

Retracted: Small RNA duplexes function as mobile silencing signals between plant cells

retracted scientific article

Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats.

scientific article published in July 2004

Role of microRNAs in plant and animal development

scientific article (publication date: 18 July 2003)

Role of transposable elements in heterochromatin and epigenetic control

scientific article (publication date: 22 July 2004)

Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection

scientific article published on 25 March 2015

Selectable viruses and altered susceptibility mutants in Arabidopsis thaliana

scientific article

Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319.

scientific article published in July 2007

Silencing on the spot. Induction and suppression of RNA silencing in the Agrobacterium-mediated transient expression system

scientific article (publication date: July 2001)

Simultaneous CRISPR/Cas9-mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 reduces cassava brown streak disease symptom severity and incidence

scientific article published on 05 October 2018

Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors

scientific article

Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum

scientific article

Small RNAs and Arabidopsis. A fast forward look

scientific article

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

scientific article published on 05 October 2009

Specialization and evolution of endogenous small RNA pathways

scientific article published on November 2007

Specific argonautes selectively bind small RNAs derived from potato spindle tuber viroid and attenuate viroid accumulation in vivo

scientific article

Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation

scientific article

Splicing and dicing with a SERRATEd edge

scholarly article

Strain-specific interaction of the tobacco etch virus NIa protein with the translation initiation factor eIF4E in the yeast two-hybrid system

scientific article

Suppressor of RNA silencing encoded by Beet yellows virus

scientific article published in February 2003

Tagging of plant potyvirus replication and movement by insertion of beta-glucuronidase into the viral polyprotein

scientific article

The 35-kDa protein from the N-terminus of the potyviral polyprotein functions as a third virus-encoded proteinase

scientific article published in December 1991

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

scientific article

The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification

scientific article

The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications

scientific article

The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases

scientific article (publication date: 18 December 2007)

Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex

scientific article (publication date: October 2010)

Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis

scientific article published on 2 May 2006

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

scientific article

Update of ASRP: the Arabidopsis Small RNA Project database

scientific article

Vectors for cell-free expression and mutagenesis of protein-coding sequences

scientific article

Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step

scientific article

Virus-derived gene expression and RNA interference vector for grapevine

scientific article published on 21 March 2012

Virus-encoded suppressor of posttranscriptional gene silencing targets a maintenance step in the silencing pathway

scientific article

microRNA-directed phasing during trans-acting siRNA biogenesis in plants

scientific article (publication date: 22 April 2005)

mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans

scientific article

Paulina is supported by:

About Paulina

Help