List of works by Anton J. Enright

3' Uridylation controls mature microRNA turnover during CD4 T-cell activation.

scientific article published on 28 March 2017

A MILI-independent piRNA biogenesis pathway empowers partial germline reprogramming

scientific article

A Neuronal Transcriptome Response Involving Stress Pathways is Buffered by Neuronal microRNAs

scientific article

A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway

scientific article

A genome-wide survey of RS domain proteins

scientific article

A high-resolution mRNA expression time course of embryonic development in zebrafish

scientific article published on 16 November 2017

A high-resolution mRNA expression time course of embryonic development in zebrafish

A logic-based diagram of signalling pathways central to macrophage activation

scientific article

A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis

scientific article published on 07 January 2019

A screen for combination therapies in BRAF/NRAS wild type melanoma identifies nilotinib plus MEK inhibitor as a synergistic combination

Activation of the TGFβ pathway impairs endothelial to haematopoietic transition

scientific article

An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice

scientific article

An Interferon Regulated MicroRNA Provides Broad Cell-Intrinsic Antiviral Immunity through Multihit Host-Directed Targeting of the Sterol Pathway

scientific article

An efficient algorithm for large-scale detection of protein families

scientific article

Annotation of mammalian primary microRNAs

article

BioLayout(Java): versatile network visualisation of structural and functional relationships

scientific article

BioLayout--an automatic graph layout algorithm for similarity visualization.

scientific article published in September 2001

CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.

scientific article published in October 2000

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics

scientific article

Chimira: analysis of small RNA sequencing data and microRNA modifications

scientific article

Classification schemes for protein structure and function.

scientific article

CoGenT++: an extensive and extensible data environment for computational genomics

scientific article

Combined agonist-antagonist genome-wide functional screening identifies broadly active antiviral microRNAs

scientific article

Computational Prediction of Protein–Protein Interactions

scientific article published on 14 August 2007

Construction, visualisation, and clustering of transcription networks from microarray expression data

scientific article

Correction: Human MicroRNA Targets

scientific article

Defective germline reprogramming rewires the spermatogonial transcriptome

Denoising inferred functional association networks obtained by gene fusion analysis

scientific article

Depletion of HPV16 early genes induces autophagy and senescence in a cervical carcinogenesis model, regardless of viral physical state.

scientific article published on November 2013

Detecting and comparing non-coding RNAs in the high-throughput era

scientific article published on 24 July 2013

Detecting microRNA binding and siRNA off-target effects from expression data

scientific article

Detection of functional modules from protein interaction networks.

scientific article published in January 2004

Efficient inhibition of miR-155 function in vivo by peptide nucleic acids

scientific article

Enhanced susceptibility to Citrobacter rodentium infection in microRNA-155-deficient mice

scientific article published on 21 December 2012

Erratum: Corrigendum: The zebrafish reference genome sequence and its relationship to the human genome

scientific article published in Nature

Estimation of synteny conservation and genome compaction between pufferfish (Fugu) and human

scientific article

Evaluation of annotation strategies using an entire genome sequence

scientific article

Evolutionary and functional insights into Leishmania META1: evidence for lateral gene transfer and a role for META1 in secretion

scientific article

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data

scientific article

Exploring regulatory networks of miR-96 in the developing inner ear

scientific article published on 18 March 2016

Extent, causes, and consequences of small RNA expression variation in human adipose tissue

scientific article

Extracellular vesicles are independent metabolic units with asparaginase activity.

scientific article

Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells.

scientific article

GeneRAGE: a robust algorithm for sequence clustering and domain detection.

scientific article published in May 2000

Genomic analysis of human microRNA transcripts

scientific article

Genomic positional conservation identifies topological anchor point (tap)RNAs linked to developmental loci

Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci.

scientific article

High-density P300 enhancers control cell state transitions

scientific article published on 6 November 2015

Human MicroRNA targets

scientific article

Identification of virus-encoded microRNAs

scientific article

Improved definition of the mouse transcriptome via targeted RNA sequencing

scientific article published on May 2016

In situ functional dissection of RNA cis-regulatory elements by multiplex CRISPR-Cas9 genome engineering

scientific article published on 13 December 2017

Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia

scientific article published on 11 February 2014

Kraken: a set of tools for quality control and analysis of high-throughput sequence data

scientific article

LIN28 Expression in malignant germ cell tumors downregulates let-7 and increases oncogene levels

scientific article published on 17 June 2013

Lack of correlation between predicted and actual off-target effects of short-interfering RNAs targeting the human papillomavirus type 16 E7 oncogene

scientific article published on 8 January 2013

Large-scale analysis of microRNA evolution

scientific article

Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis

scientific article

Large-scale identification of microRNA targets in murine Dgcr8-deficient embryonic stem cell lines

scientific article

MagicMatch--cross-referencing sequence identifiers across databases

scientific article published on 16 June 2005

Malignant germ cell tumors display common microRNA profiles resulting in global changes in expression of messenger RNA targets

scientific article

MapMi: automated mapping of microRNA loci

scientific article

Mapping functional associations in the entire genome of Drosophila melanogaster using fusion analysis

scientific article

Messenger RNA and microRNA profiling during early mouse EB formation.

scientific article published in April 2011

MiR-221 influences effector functions and actin cytoskeleton in mast cells

scientific article published in 2011

MiR-25 regulates Wwp2 and Fbxw7 and promotes reprogramming of mouse fibroblast cells to iPSCs.

scientific article

MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni

scientific article

MicroRNA degradation by a conserved target RNA regulates animal behavior.

scientific article published on 26 February 2018

MicroRNA targets in Drosophila

scientific article

MicroRNA-9 inhibition of cell proliferation and identification of novel miR-9 targets by transcriptome profiling in breast cancer cells

scientific article

Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests

scientific article published on 25 September 2017

Multiple epigenetic mechanisms and the piRNA pathway enforce LINE1 silencing during adult spermatogenesis

scientific journal article

Myriads of protein families, and still counting

scientific article published in 2003

Network visualization and analysis of gene expression data using BioLayout Express(3D).

scientific article

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis

Prediction of microRNA targets

scientific article

Protein families and TRIBES in genome sequence space

scientific article

Protein interaction maps for complete genomes based on gene fusion events

scientific article (publication date: 4 November 1999)

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing

scientific article published on 9 March 2015

RNA editing of human microRNAs

scientific article published on 4 April 2006

RNAcentral: A vision for an international database of RNA sequences

scientific article (publication date: November 2011)

Re-annotation of the physical map of Glycine max for polyploid-like regions by BAC end sequence driven whole genome shotgun read assembly

scientific article published on 7 July 2008

Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation

scientific article

Requirement of bic/microRNA-155 for normal immune function

scientific article

Serum levels of mature microRNAs in DICER1-mutated pleuropulmonary blastoma

scientific article

Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis

scientific article published on 25 August 2021

Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response

scientific article published on 21 April 2022

Solid tumors of childhood display specific serum microRNA profiles

scientific article

SylArray: a web server for automated detection of miRNA effects from expression data

scientific article

Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis

scientific article

Targeted deletion of microRNA-22 promotes stress-induced cardiac dilation and contractile dysfunction.

scientific article

Terminal uridylyltransferases target RNA viruses as part of the innate immune system

scientific article published on 13 August 2018

Terminal uridylyltransferases target RNA viruses as part of the innate immune system in animals

Textquest: document clustering of Medline abstracts for concept discovery in molecular biology.

scientific article published on January 2001

The RNA m6A Reader YTHDF2 Is Essential for the Post-transcriptional Regulation of the Maternal Transcriptome and Oocyte Competence

scientific article published on 30 August 2017

The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements

scientific journal article

The miR-144/451 locus is required for erythroid homeostasis

scientific article

The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis

scientific article published on 04 October 2019

The two most common histological subtypes of malignant germ cell tumour are distinguished by global microRNA profiles, associated with differential transcription factor expression

scientific article

Transcription-associated protein families are primarily taxon-specific

scientific article published in January 2001

Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution

scientific article

Visualisation and analysis of RNA-Seq assembly graphs

article

Visualisation of BioPAX Networks using BioLayout Express (3D)

scientific article

Visualization and analysis of RNA-Seq assembly graphs

scientific article published on 01 August 2019

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future

scientific article (publication date: 2015)

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization

scientific article

iMotifs: an integrated sequence motif visualization and analysis environment

scientific article

mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome

scientific article

miR-221 affects multiple cancer pathways by modulating the level of hundreds messenger RNAs

scientific article

miRBase: microRNA sequences, targets and gene nomenclature

scientific article

miRBase: tools for microRNA genomics

scientific article

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

scientific article published on 19 May 2016

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