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List of works by David E. Graham

2-oxoacid metabolism in methanogenic CoM and CoB biosynthesis.

scientific article

A divergent archaeal member of the alkaline phosphatase binuclear metalloenzyme superfamily has phosphoglycerate mutase activity

scientific article

A dual-specificity aminoacyl-tRNA synthetase in the deep-rooted eukaryote Giardia lamblia

scientific article

A korarchaeal genome reveals insights into the evolution of the Archaea

scientific article

A member of a new class of GTP cyclohydrolases produces formylaminopyrimidine nucleotide monophosphates

scientific article

A microbial functional group-based module for simulating methane production and consumption: Application to an incubated permafrost soil

article

A new role for coenzyme F420 in aflatoxin reduction by soil mycobacteria

scientific article published on November 1, 2010

Acetamido sugar biosynthesis in the Euryarchaea

scientific article

Active layer hydrology in an arctic tundra ecosystem: quantifying water sources and cycling using water stable isotopes

scholarly article by Heather M. Throckmorton et al published 26 August 2016 in Hydrological Processes

Archaeal ApbC/Nbp35 homologs function as iron-sulfur cluster carrier proteins

scientific article published on 29 December 2008

Biogeochemical modeling of CO<sub>2</sub> and CH<sub>4</sub> production in anoxic Arctic soil microcosms

scientific article published in 2016

Biosynthesis of phosphoserine in the Methanococcales

scientific article published on 27 October 2006

Characterization of an acid-dependent arginine decarboxylase enzyme from Chlamydophila pneumoniae

scientific article

Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations

scientific article published on 4 January 2012

Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T.

scientific article

Convergent evolution of coenzyme M biosynthesis in the Methanosarcinales: cysteate synthase evolved from an ancestral threonine synthase.

scientific article

Crenarchaeal arginine decarboxylase evolved from an S-adenosylmethionine decarboxylase enzyme

scientific article published on 23 July 2008

Cryomilled zinc sulfide: A prophylactic for Staphylococcus aureus-infected wounds.

scientific article published in January 2018

Cysteinyl-tRNA formation: the last puzzle of aminoacyl-tRNA synthesis.

scientific article

Development of a microsampler suitable for aerial collection of aerosol particles

scientific article published in 2023

Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography

scientific article

Draft Genome Sequence of Streptomyces vitaminophilus ATCC 31673, a Producer of Pyrrolomycin Antibiotics, Some of Which Contain a Nitro Group ⬇️

scientific article

Effects of warming on the degradation and production of low-molecular-weight labile organic carbon in an Arctic tundra soil

article

Elucidation of methanogenic coenzyme biosyntheses: from spectroscopy to genomics

scientific article

Engineering acidic Streptomyces rubiginosus D-xylose isomerase by rational enzyme design

scientific article

Enzymatic analysis of uridine diphosphate N-acetyl-D-glucosamine

scientific article published on 27 June 2008

Enzymology and evolution of the pyruvate pathway to 2-oxobutyrate in Methanocaldococcus jannaschii

scientific article published on 20 April 2007

Erratum: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

scientific article published in Nature

Genome of Methanocaldococcus (Methanococcus) jannaschii

scientific article

Geochemical drivers of organic matter decomposition in arctic tundra soils

article

Heterologous expression, purification, crystallization and preliminary X-ray analysis of Trichoderma reesei xylanase II and four variants

scientific article published on 27 February 2013

Identification and characterization of a L-tyrosine decarboxylase in Methanocaldococcus jannaschii

scientific article

Identification and characterization of archaeal and fungal tRNA methyltransferases

scientific article published on January 2007

Identification of a highly diverged class of S-adenosylmethionine synthetases in the archaea

scientific article published on February 2000

Identification of coenzyme M biosynthetic phosphosulfolactate synthase: a new family of sulfonate-biosynthesizing enzymes

scientific article

Identification of the 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase required for coenzyme F(420) biosynthesis

scientific article

Impacts of temperature and soil characteristics on methane production and oxidation in Arctic polygonal tundra

Impacts of temperature and soil characteristics on methane production and oxidation in Arctic tundra

scientific article published in 2018

Improved ZnS nanoparticle properties through sequential NanoFermentation

scientific article published on 04 August 2018

Improvement of cellulose catabolism in Clostridium cellulolyticum by sporulation abolishment and carbon alleviation.

scientific article published on 20 February 2014

In situ capping for size control of monochalcogenide (ZnS, CdS and SnS) nanocrystals produced by anaerobic metal-reducing bacteria

scientific article published on 24 July 2015

Independent inactivation of arginine decarboxylase genes by nonsense and missense mutations led to pseudogene formation in Chlamydia trachomatis serovar L2 and D strains

scientific article

Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry

scientific article published on 12 June 2015

Influence of Structural Defects on Biomineralized ZnS Nanoparticle Dissolution: An in-Situ Electron Microscopy Study

scientific article published on 19 December 2017

Influence of iron redox cycling on organo-mineral associations in Arctic tundra soil

scholarly article

Influences of Hillslope Biogeochemistry on Anaerobic Soil Organic Matter Decomposition in a Tundra Watershed

scientific article published in 2020

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park

scientific article

Iron cycle interactions with hydrological dynamics reduce methane production in a simulated Arctic soil

scientific article

Iron-Dependent Enzyme Catalyzes the Initial Step in Biodegradation of N-Nitroglycine by Variovorax sp. Strain JS1663.

scientific article published on 19 May 2017

Isotopic identification of soil and permafrost nitrate sources in an Arctic tundra ecosystem

scholarly article

L-Arabinose binding, isomerization, and epimerization by D-xylose isomerase: X-ray/neutron crystallographic and molecular simulation study

scientific article

Label-free quantitative proteomics for the extremely thermophilic bacterium Caldicellulosiruptor obsidiansis reveal distinct abundance patterns upon growth on cellobiose, crystalline cellulose, and switchgrass

scientific article

Manufacturing demonstration of microbially mediated zinc sulfide nanoparticles in pilot-plant scale reactors

scientific article published on 27 April 2016

Methanococcus jannaschii uses a pyruvoyl-dependent arginine decarboxylase in polyamine biosynthesis

scientific article published on 29 April 2002

Methanogen homoaconitase catalyzes both hydrolyase reactions in coenzyme B biosynthesis

scientific article

Methanogens with pseudomurein use diaminopimelate aminotransferase in lysine biosynthesis

scientific article published on 25 March 2008

Microbes in thawing permafrost: the unknown variable in the climate change equation

scientific article

Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment

scientific article published on 19 September 2017

Modeling anaerobic soil organic carbon decomposition in Arctic polygon tundra: insights into soil geochemical influences on carbon mineralization

scientific article published in 2019

Molecular Insights into Arctic Soil Organic Matter Degradation under Warming

article

Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media

scientific article published on 27 December 2012

Outer and inner membrane proteins compose an arginine-agmatine exchange system in Chlamydophila pneumoniae

scientific article published on 12 September 2008

Pathways of anaerobic organic matter decomposition in tundra soils from Barrow, Alaska

article

Phosphoprotein with phosphoglycerate mutase activity from the archaeon Sulfolobus solfataricus ⬇️

scientific article

Potential carbon emissions dominated by carbon dioxide from thawed permafrost soils

scholarly article by Christina Schädel et al published 13 June 2016 in Nature Climate Change

Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii

article

Reductive dehalogenation of monobromobimane by tris(2-carboxyethyl)phosphine

scientific article

Reviews and syntheses: Four Decades of Modeling Methane Cycling in Terrestrial Ecosystems

scientific article

Reviews and syntheses: Four decades of modeling methane cycling in terrestrial ecosystems

article

S-Adenosylmethionine decarboxylase from the archaeon Methanococcus jannaschii: identification of a novel family of pyruvoyl enzymes

scientific article

Simulated Hydrological Dynamics and Coupled Iron Redox Cycling Impact Methane Production in an Arctic Soil

scientific article published in 2022

Size tunable elemental copper nanoparticles: extracellular synthesis by thermoanaerobic bacteria and capping molecules

Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales

scientific article published on 01 July 2019

Stoichiometry and temperature sensitivity of methanogenesis and CO2 production from saturated polygonal tundra in Barrow, Alaska

scientific article

Substrate specificity determinants of the methanogen homoaconitase enzyme: structure and function of the small subunit

scientific article

The Korarchaeota: Archaeal orphans representing an ancestral lineage of life

The Methanococcus jannaschii dCTP deaminase is a bifunctional deaminase and diphosphatase

scientific article

The complete genome of the hyperthermophilic bacterium Aquifex aeolicus ⬇️

scientific article published on March 26, 1998

The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

scientific article

The genome of M. acetivorans reveals extensive metabolic and physiological diversity

scientific article

The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism

scientific article

Transcriptional regulation of the Escherichia coli gene rraB, encoding a protein inhibitor of RNase E.

scientific article published on 28 August 2009

Transfer region of a bacteroides conjugative transposon, CTnDOT.

scientific article

Transport of perfluorocarbon tracers in the Cranfield Geological Carbon Sequestration Project

scholarly article by Mohamad Reza Soltanian et al published 5 June 2018 in Greenhouse Gases: science and technology

UV-activated ZnO films on a flexible substrate for room temperature O2 and H2O sensing.

scientific article published on 20 July 2017

Use of label-free quantitative proteomics to distinguish the secreted cellulolytic systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis

scientific article

Warming increases methylmercury production in an Arctic soil

scientific article

X-ray crystallographic studies of family 11 xylanase Michaelis and product complexes: implications for the catalytic mechanism

scientific article

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