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List of works by Neil Hall

400000 nematode ESTs on the Net.

scientific article

A Multilocus Sequence Typing System (MLST) reveals a high level of diversity and a genetic component to Entamoeba histolytica virulence

scientific article

A Plasmodium whole-genome synteny map: indels and synteny breakpoints as foci for species-specific genes

scientific article

A case for a Glossina genome project

scientific article

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

scientific article published on 14 January 2016

A comprehensive genetic analysis of candidate genes regulating response to Trypanosoma congolense infection in mice

scientific article

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

scientific article

A de novo expression profiling of Anopheles funestus, malaria vector in Africa, using 454 pyrosequencing

scientific article

A genome sequence survey of the filarial nematode Brugia malayi: repeats, gene discovery, and comparative genomics

scientific article

A genome-wide survey of DNA methylation in hexaploid wheat

scientific article published on 10 December 2015

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

scientific article

A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei

scientific article

A simple procedure for directly obtaining haplotype sequences of diploid genomes

scientific article published on 28 August 2015

A transcriptomic analysis of the phylum Nematoda

article

Accurate determination of microbial diversity from 454 pyrosequencing data

scientific article

Advanced sequencing technologies and their wider impact in microbiology

scientific article

After the gold rush

scientific article published on 7 May 2013

An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes

scientific article published on 21 December 2021

An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm

scientific article

Analysis of the bread wheat genome using whole-genome shotgun sequencing

scientific article

Analysis of transcriptional response to heat stress in Rhazya stricta

scientific article

Antagonistic coevolution accelerates molecular evolution

scientific article published on 24 February 2010

Application of next-generation sequencing technologies in virology

scientific article published on 30 May 2012

Arabidopsis thaliana leaf form evolved via loss of KNOX expression in leaves in association with a selective sweep

scientific article published on 2 December 2010

Bacterial sensing underlies artificial sweetener-induced growth of gut Lactobacillus.

scientific article published on 9 June 2015

Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules

scientific article

Colonic mucosa-associated diffusely adherent afaC+ Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer.

scientific article

Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii

scientific article

Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides.

scientific article published in January 2018

Comparative genomics and transduction potential of Enterococcus faecalis temperate bacteriophages

scientific article

Comparative genomics of malaria parasites

scientific article

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

scientific article published on 15 July 2004

Comparative genomics of trypanosomatid parasitic protozoa

scientific article (publication date: 15 July 2005)

Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use.

scientific article

Corrigendum: Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes

scientific article published on 9 April 2015

DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies

scientific article published on 27 June 2019

Dietary supplementation with lactose or artificial sweetener enhances swine gut Lactobacillus population abundance

Draft Genome Sequence of Bacillus Species from the Rhizosphere of the Desert Plant Rhazya stricta.

scientific article

Editorial overview: Genomics: The era of genomically-enabled microbiology

scholarly article by Neil Hall & Jay C. D. Hinton published February 2015 in Current Opinion in Microbiology

Entamoeba: still more to be learned from the genome

scientific article published on 01 October 2005

Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems

scientific article

Erratum: Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article published in Nature

Evidence of gene conversion in genes encoding the Gal/GalNac lectin complex of Entamoeba

scientific article

Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

scientific article published on 08 June 2020

Evolutionary genomics of Entamoeba ⬇️

scientific article published on February 2011

Evolutionary pressures on apicoplast transit peptides

scientific article

Expanded genome-wide comparisons give novel insights into population structure and genetic heterogeneity of Leishmania tropica complex

scientific article published on 18 September 2020

Exploring the diversity of Arcobacter butzleri from cattle in the UK using MLST and whole genome sequencing

scientific article

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture

scientific article published on 06 April 2021

Fast forward genetics

scientific article

From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula

scientific article published on 2 March 2012

Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis

scientific article

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database

scientific article

Gene arrays at Pneumocystis carinii telomeres

scientific article published on 18 June 2005

Gene discovery in the Entamoeba invadens genome

scientific article

Gene synteny and evolution of genome architecture in trypanosomatids

article

GeneMill: A 21st century platform for innovation

scientific article

Genetic Diversity and Gene Family Expansions in Members of the Genus Entamoeba

article

Genetic characterization indicates that a specific subpopulation of Pseudomonas aeruginosa is associated with keratitis infections

scientific article published on 12 January 2011

Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes

scientific article

Genome of the Host-Cell Transforming Parasite Theileria annulata Compared with T. parva

scientific article

Genome sequence of the human malaria parasite Plasmodium falciparum

scientific article

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species

scientific article (publication date: 10 December 2008)

Genomic changes during evolution of animal parasitism in eukaryotes

scientific article

Genomic characterisation of invasive non-typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans isolates from Malawi ⬇️

scientific article

Genomic diversity of the human intestinal parasite Entamoeba histolytica

scientific article published on 25 May 2012

Genomic insights into the other malaria ⬇️

scientific article published on September 1, 2012

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article

Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes

scientific article published on 21 March 2011

High Throughput Sequencing of Entamoeba 27nt Small RNA Population Reveals Role in Permanent Gene Silencing But No Effect on Regulating Gene Expression Changes during Stage Conversion, Oxidative, or Heat Shock Stress

scientific article published on 6 August 2015

Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes

scientific article

Host-Parasite interactions in Entamoeba histolytica and Entamoeba dispar: what have we learned from their genomes?

scientific article

Identification of a mutation associated with fatal Foal Immunodeficiency Syndrome in the Fell and Dales pony

scientific article

Identification of candidate protective variants for common diseases and evaluation of their protective potential

scientific article

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

scientific article

Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom

scientific article published on 30 January 2020

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

scientific article published on 13 January 2015

Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster

scientific article published on April 2004

Insights into the P. y. yoelii hepatic stage transcriptome reveal complex transcriptional patterns

scientific article published in August 2005

It's only human

scientific article published on 12 February 2014

Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes

scientific article

Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat

scientific article published on 3 May 2016

Meeting report: the fourth Genomic Standards Consortium (GSC) workshop

scientific article published in June 2008

Molecular evolution of cytochrome C oxidase-I protein of insects living in Saudi Arabia

scientific article published on 04 November 2019

Multilocus Analysis Resolves the European Finch Epidemic Strain of Trichomonas gallinae and Suggests Introgression from Divergent Trichomonads

scientific article published on 01 August 2019

New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information

scientific article

Novel host-related virulence factors are encoded by squirrelpox virus, the main causative agent of epidemic disease in red squirrels in the UK.

scientific article

Parasites are GO.

scientific article published in October 2001

Patterns of evolution in the unique tRNA gene arrays of the genus Entamoeba

scientific article published on November 2007

Phylogenomics of the killer whale indicates ecotype divergence in sympatry.

scientific article

Plasmodium falciparum variant surface antigen expression patterns during malaria

scientific article

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift.

scientific article

Regulation of sexual development of Plasmodium by translational repression

scientific article

Revised Genome Sequence of the Purple Photosynthetic Bacterium Blastochloris viridis.

scientific article published on 21 January 2016

Royal Society discussion meeting: utilising the genome sequence of parasitic protozoa

scientific article

SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms

scientific article published in July 2017

Salmonella identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets

scientific article published on 24 November 2020

Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13

scientific article

Sexual reproduction and genetic exchange in parasitic protists

scientific article published on 22 December 2014

Single cell ecology

scientific article published on 07 October 2019

Small RNA pyrosequencing in the protozoan parasite Entamoeba histolytica reveals strain-specific small RNAs that target virulence genes

scientific article

Standards recommendations for the Earth BioGenome Project

scientific article published on 18 January 2022

Structure and content of the Entamoeba histolytica genome

scientific article published on January 2007

Targeted re-sequencing of the allohexaploid wheat exome

scientific article published on 18 June 2012

The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism

scientific article

The Earth BioGenome Project 2020: Starting the clock

scientific article published on 25 January 2022

The Kardashian index: a measure of discrepant social media profile for scientists

The paper in which Neil Hall proposed the "Kardashian Index"

The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense

scientific article published on 01 September 2018

The architecture of variant surface glycoprotein gene expression sites in Trypanosoma brucei

scientific article

The ash dieback invasion of Europe was founded by two genetically divergent individuals ⬇️

scientific article published on 23 April 2018

The diversity of Rab GTPases in Entamoeba histolytica

scientific article published on 7 April 2005

The diversity, evolution and ecology of Salmonella in venomous snakes

scientific article published on 04 June 2019

The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction

scientific article

The genetic map and comparative analysis with the physical map of Trypanosoma brucei

scientific article

The genetic map and comparative analysis with the physical map of Trypanosoma brucei

scientific article (publication date: 30 January 2006)

The genome and transcriptome of the enteric parasite Entamoeba invadens, a model for encystation

scientific article

The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution

scientific article published on 25 October 2012

The genome of the protist parasite Entamoeba histolytica

scientific article

The genome of the simian and human malaria parasite Plasmodium knowlesi

scientific article

The genome of the social amoeba Dictyostelium discoideum

scientific article

The industrial melanism mutation in British peppered moths is a transposable element

scientific article

The ingi and RIME non-LTR Retrotransposons Are Not Randomly Distributed in the Genome of Trypanosoma brucei

scientific article published on 23 December 2003

The intestinal protozoan parasite Entamoeba histolytica contains 20 cysteine protease genes, of which only a small subset is expressed during in vitro cultivation

scientific article

The revolution of whole genome sequencing to study parasites

scientific article

Towards better models and mechanistic biomarkers for drug-induced gastrointestinal injury

scientific article published on 26 January 2017

Towards the human colorectal cancer microbiome

scientific article

Transcriptome sequencing of human breast cancer reveals aberrant intronic transcription in amplicons and dysregulation of alternative splicing with major therapeutic implications

scientific article

Transcriptomic analysis of salt stress responsive genes in Rhazya stricta

scientific article

Transcriptomic and metabolic responses of Calotropis procera to salt and drought stress

scientific article

Transcript‐specific, single‐nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.) ⬇️

scientific article published on June 1, 2011

Unique organisation of tRNA genes in Entamoeba histolytica

scientific article published on 28 October 2005

Using genic sequence capture in combination with a syntenic pseudo genome to map a deletion mutant in a wheat species

scientific article

Whole genome sequencing of a natural recombinant Toxoplasma gondii strain reveals chromosome sorting and local allelic variants ⬇️

scientific article (publication date: 2009)

Why science and synchronized swimming should not be Olympic sports ⬇️

scientific article published on September 26, 2012

Why sequence all eukaryotes?

scientific article published on 01 January 2022

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