List of works - Tetsuo Kobayashi

A Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq.

scientific article

A hyperthermophilic sulfur-reducing archaebacterium, Thermococcus sp. DT1331, isolated from a deep-sea hydrothermal vent.

scientific article

A hypothetical protein (P20), homologous to Tn3 repressor is encoded downstream from the bla regulatory region in Bacillus licheniformis 749

scientific article published on June 1988

A novel nuclear factor, SREB, binds to a cis-acting element, SRE, required for inducible expression of the Aspergillus oryzae Taka-amylase A gene in A. nidulans

scientific article published on 01 March 2000

A second regulatory gene, blaR1, encoding a potential penicillin-binding protein required for induction of beta-lactamase in Bacillus licheniformis

scientific article

A simple and rapid method for the preparation of a cell-free extract with CCAAT-binding activity from filamentous fungi

scientific article published on 01 February 2000

A single subunit of a heterotrimeric CCAAT-binding complex carries a nuclear localization signal: piggy back transport of the pre-assembled complex to the nucleus.

scientific article published in September 2004

A transcriptional activator, AoXlnR, controls the expression of genes encoding xylanolytic enzymes in Aspergillus oryzae

scientific article published in March 2002

ASYMMETRIC-LEAVES2 and an ortholog of eukaryotic NudC domain proteins repress expression of AUXIN-RESPONSE-FACTOR and class 1 KNOX homeobox genes for development of flat symmetric leaves in Arabidopsis

scientific article

An Aspergillus nidulans nuclear protein, AnCP, involved in enhancement of Taka-amylase A gene expression, binds to the CCAAT-containing taaG2, amdS, and gatA promoters

scientific article published on March 1997

An Aspergillus oryzae CCAAT-binding protein, AoCP, is involved in the high-level expression of the Taka-amylase A gene

article

Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions

scientific article

Analysis of the flagellin (hag) gene of alkalophilic Bacillus sp. C-125.

scientific article

AoHapB, AoHapC and AoHapE, subunits of the Aspergillus oryzae CCAAT-binding complex, are functionally interchangeable with the corresponding subunits in Aspergillus nidulans

scientific article published on 01 May 2001

Biochemical characterization of thermostable β-1,4-mannanase belonging to the glycoside hydrolase family 134 from Aspergillus oryzae.

scientific article published on 19 January 2017

Characterization of AnRP-mediated negative regulation of the xylanase gene, cgxA, from Chaetomium gracile in Aspergillus nidulans.

scientific article

Characterization of the acivicin effects on trichothecene production by Fusarium graminearum species complex.

scientific article published on 6 September 2016

Characterization of the amyR gene encoding a transcriptional activator for the amylase genes in Aspergillus nidulans

scientific article published in February 2001

Cloning and characterization of the streptothricin-resistance gene which encodes streptothricin acetyltransferase from Streptomyces lavendulae

scientific article published on 01 May 1986

Cloning, expression, and nucleotide sequence of the alpha-amylase gene from the haloalkaliphilic archaeon Natronococcus sp. strain Ah-36

scientific article

Comparison and characterization of α-amylase inducers in Aspergillus nidulans based on nuclear localization of AmyR.

scientific article published on 18 January 2012

Comparison of the paralogous transcription factors AraR and XlnR in Aspergillus oryzae.

scientific article published on 13 April 2018

Complex regulation of hydrolytic enzyme genes for cellulosic biomass degradation in filamentous fungi

scientific article published on 11 April 2014

Comprehensive analysis of the DNA-binding specificity of an Aspergillus nidulans transcription factor, AmyR, using a bead display system

scientific article

Comprehensive investigation of the gene expression system regulated by an Aspergillus oryzae transcription factor XlnR using integrated mining of gSELEX-Seq and microarray data

article

Conservation and diversity of the regulators of cellulolytic enzyme genes in Ascomycete fungi

scientific article

Construction of a bacterial artificial chromosome library for a myxobacterium of the genus Cystobacter and characterization of an antibiotic biosynthetic gene cluster ⬇️

scientific article published on July 2005

Construction of an excretion vector and extracellular production of human growth hormone from Escherichia coli

scientific article published on 01 January 1987

Control of reactive oxygen species (ROS) production through histidine kinases in Aspergillus nidulans under different growth conditions.

scientific article published on 7 January 2014

CreA-independent carbon catabolite repression of cellulase genes by trimeric G-protein and protein kinase A in Aspergillus nidulans

scientific article published on 22 February 2019

Deciphering the combinatorial DNA-binding code of the CCAAT-binding complex and the iron-regulatory basic region leucine zipper (bZIP) transcription factor HapX.

scientific article published on 14 January 2015

Effect of disrupting the trichothecene efflux pump encoded by FgTri12 in the nivalenol chemotype of Fusarium graminearum

Effects of acivicin on growth, mycotoxin production and virulence of phytopathogenic fungi

article

Enzymatic saccharification of Eucalyptus bark using hydrothermal pre-treatment with carbon dioxide.

scientific article published on 7 October 2009

Excretion of the penicillinase of an alkalophilic Bacillus sp. through the Escherichia coli outer membrane is caused by insertional activation of the kil gene in plasmid pMB9.

scientific article

Expression in Escherichia coli of the carboxy terminal domain of the BLAR sensory-transducer protein of Bacillus licheniformis as a water-soluble Mr 26,000 penicillin-binding protein.

scientific article

Expression profile of amylolytic genes in Aspergillus nidulans.

scientific article published on 07 October 2006

Functional analysis of the egl3 upstream region in filamentous fungus Trichoderma reesei

scientific article published on 16 January 2008

GFP-tagged expression analysis revealed that some histidine kinases of Aspergillus nidulans show temporally and spatially different expression during the life cycle.

scientific article published on 7 February 2008

Genes regulated by AoXlnR, the xylanolytic and cellulolytic transcriptional regulator, in Aspergillus oryzae.

scientific article

Genome sequence of Aspergillus luchuensis NBRC 4314.

scientific article published on 20 September 2016

Genome sequencing and analysis of Aspergillus oryzae

scientific article

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article

Genomics of Aspergillus oryzae.

scientific article published on 7 March 2007

Haloalkaliphilic maltotriose-forming alpha-amylase from the archaebacterium Natronococcus sp. strain Ah-36.

scientific article published on June 1992

High-throughput screening of DNA binding sites for transcription factor AmyR from Aspergillus nidulans using DNA beads display system

scientific article

Hydroxylations of trichothecene rings in the biosynthesis of Fusarium trichothecenes: evolution of alternative pathways in the nivalenol chemotype.

scientific article published on 27 April 2016

Identification and Characterization of Small Molecule Compounds That Modulate Trichothecene Production by Fusarium graminearum

scientific article published on 26 March 2018

Identification and characterization of an inhibitor of trichothecene 3-O-acetyltransferase, TRI101, by the chemical array approach

scientific article

Identification of amino acids negatively affecting Fusarium trichothecene biosynthesis

scientific article published on 28 September 2018

Identification of specific binding sites for XYR1, a transcriptional activator of cellulolytic and xylanolytic genes in Trichoderma reesei

scientific article published on 23 April 2009

Identification of the cis-acting elements involved in regulation of xylanase III gene expression in Trichoderma reesei PC-3-7.

scientific article published on 25 March 2008

Impact of nitrogen metabolism-associated culture pH changes on regulation of Fusarium trichothecene biosynthesis: revision of roles of polyamine agmatine and transcription factor AreA

scientific article published on 18 August 2020

In vitro analysis of His-Asp phosphorelays in Aspergillus nidulans: the first direct biochemical evidence for the existence of His-Asp phosphotransfer systems in filamentous fungi

scientific article published on 7 October 2007

Inducer-dependent nuclear localization of a Zn(II)(2)Cys(6) transcriptional activator, AmyR, in Aspergillus nidulans

scientific article

Involvement of an SRF-MADS protein McmA in regulation of extracellular enzyme production and asexual/sexual development in Aspergillus nidulans

scientific article published on 11 March 2016

Isolation and characterization of a pock-forming plasmid pTA4001 from Streptomyces lavendulae. ⬇️

scientific article

Isolation of genes encoding novel transcription factors which interact with the Hap complex from Aspergillus species.

scientific article

Isomaltose formed by alpha-glucosidases triggers amylase induction in Aspergillus nidulans

scientific article published on 13 September 2002

Location of F1 ATPase-like genes on the physical map of the Bacillus subtilis 168 chromosome

scientific article published on July 1993

ManR, a novel Zn(II)2Cys6 transcriptional activator, controls the β-mannan utilization system in Aspergillus oryzae

scientific article

ManR, a transcriptional regulator of the β-mannan utilization system, controls the cellulose utilization system in Aspergillus oryzae

scientific article

McmA-dependent and -independent regulatory systems governing expression of ClrB-regulated cellulase and hemicellulase genes in Aspergillus nidulans

scientific article published on 2 September 2016

Mode of AmyR binding to the CGGN8AGG sequence in the Aspergillus oryzae taaG2 promoter

scientific article published on 01 September 2004

Molecular cloning and nucleotide sequence of the groEL gene from the alkaliphilic Bacillus sp. strain C-125 and reactivation of thermally inactivated alpha-glucosidase by recombinant GroEL.

scientific article published in October 1996

Molecular cloning, nucleotide sequence and expression of the structural gene for a thermostable alkaline protease from Bacillus sp. no. AH-101.

scientific article published on October 1992

Natronococcus amylolyticus sp. nov., a haloalkaliphilic archaeon

scientific article published on October 1995

No factors except for the hap complex increase the Taka-amylase A gene expression by binding to the CCAAT sequence in the promoter region

article

Novel alpha-glucosidase from Aspergillus nidulans with strong transglycosylation activity

scientific article published on March 2002

Novel promoter sequence required for inductive expression of the Aspergillus nidulans endoglucanase gene eglA.

scientific article published on 7 February 2008

Novel reporter gene expression systems for monitoring activation of the Aspergillus nidulans HOG pathway

article

Novel β-1,4-Mannanase Belonging to a New Glycoside Hydrolase Family in Aspergillus nidulans

scientific article published on 18 September 2015

Nuclear translocation of the heterotrimeric CCAAT binding factor of Aspergillus oryzae is dependent on two redundant localising signals in a single subunit.

scientific article published on 21 October 2005

Oligosaccharides containing an α-(1→2) (glucosyl/xylosyl)-fructosyl linkage as inducer molecules of trichothecene biosynthesis for Fusarium graminearum.

scientific article published on 16 September 2016

Post-genomic approaches to understanding interactions between fungi and their environment.

scientific article

Properties of glutamate dehydrogenase and its involvement in alanine production in a hyperthermophilic archaeon, Thermococcus profundus

scientific article published in September 1995

Purification and Properties of Extracellular Amylase from the Hyperthermophilic Archaeon Thermococcus profundus DT5432.

scientific article

Purification and biochemical characterization of streptothricin acetyltransferase coded by the cloned streptothricin-resistance gene of Streptomyces lavendulae ⬇️

scientific article published on 01 July 1987

Re-examination of genetic and nutritional factors related to trichothecene biosynthesis in Fusarium graminearum.

scientific article published on 28 September 2015

Regulation of cellulolytic genes by McmA, the SRF-MADS box protein in Aspergillus nidulans

scientific article published on 18 January 2013

Regulation of genes encoding cellulolytic enzymes by Pal-PacC signaling in Aspergillus nidulans

scientific article

Regulation of the amylolytic and (hemi-)cellulolytic genes in aspergilli

article

Spatial Abundance and Distribution of Potential Microbes and Functional Genes Associated with Anaerobic Mineralization of Pentachlorophenol in a Cylindrical Reactor

scientific article published on 11 January 2016

Structural features of the glycogen branching enzyme encoding genes from aspergilli.

scientific article published on January 2002

Structure and expression properties of the endo-beta-1,4-glucanase A gene from the filamentous fungus Aspergillus nidulans

scientific article published in June 1999

Structure, function, and fate of the BlaR signal transducer involved in induction of beta-lactamase in Bacillus licheniformis

scientific article

The Aspergillus nidulans CCAAT-binding factor AnCP/AnCF is a heteromeric protein analogous to the HAP complex of Saccharomyces cerevisiae ⬇️

scientific article published on February 1, 1998

The SskA and SrrA response regulators are implicated in oxidative stress responses of hyphae and asexual spores in the phosphorelay signaling network of Aspergillus nidulans.

scientific article published on 7 April 2007

The region in a subunit of the Aspergillus CCAAT-binding protein similar to the HAP4p-recruiting domain of Saccharomyces cerevisiae Hap5p is not essential for transcriptional enhancement

scientific article published on 01 April 2006

Transcriptional activator, AoXlnR, mediates cellulose-inductive expression of the xylanolytic and cellulolytic genes in Aspergillus oryzae.

scientific article published in September 2002

Upregulation of promoter activity of the Aspergillus oryzae xylanase gene by site-directed mutagenesis

article

Upward shift of the pH optimum of Acremonium ascorbate oxidase.

scientific article published in April 2002

Xylose Triggers Reversible Phosphorylation of XlnR, the Fungal Transcriptional Activator of Xylanolytic and Cellulolytic Genes in Aspergillus oryzae ⬇️

scientific article published on May 20, 2011

List of works by Tetsuo Kobayashi

A Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq.

A hyperthermophilic sulfur-reducing archaebacterium, Thermococcus sp. DT1331, isolated from a deep-sea hydrothermal vent.

A hypothetical protein (P20), homologous to Tn3 repressor is encoded downstream from the bla regulatory region in Bacillus licheniformis 749

A novel nuclear factor, SREB, binds to a cis-acting element, SRE, required for inducible expression of the Aspergillus oryzae Taka-amylase A gene in A. nidulans

A second regulatory gene, blaR1, encoding a potential penicillin-binding protein required for induction of beta-lactamase in Bacillus licheniformis

A simple and rapid method for the preparation of a cell-free extract with CCAAT-binding activity from filamentous fungi

A single subunit of a heterotrimeric CCAAT-binding complex carries a nuclear localization signal: piggy back transport of the pre-assembled complex to the nucleus.

A transcriptional activator, AoXlnR, controls the expression of genes encoding xylanolytic enzymes in Aspergillus oryzae

ASYMMETRIC-LEAVES2 and an ortholog of eukaryotic NudC domain proteins repress expression of AUXIN-RESPONSE-FACTOR and class 1 KNOX homeobox genes for development of flat symmetric leaves in Arabidopsis

An Aspergillus nidulans nuclear protein, AnCP, involved in enhancement of Taka-amylase A gene expression, binds to the CCAAT-containing taaG2, amdS, and gatA promoters

An Aspergillus oryzae CCAAT-binding protein, AoCP, is involved in the high-level expression of the Taka-amylase A gene

Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions

Analysis of the flagellin (hag) gene of alkalophilic Bacillus sp. C-125.

AoHapB, AoHapC and AoHapE, subunits of the Aspergillus oryzae CCAAT-binding complex, are functionally interchangeable with the corresponding subunits in Aspergillus nidulans

Biochemical characterization of thermostable β-1,4-mannanase belonging to the glycoside hydrolase family 134 from Aspergillus oryzae.

Characterization of AnRP-mediated negative regulation of the xylanase gene, cgxA, from Chaetomium gracile in Aspergillus nidulans.

Characterization of the acivicin effects on trichothecene production by Fusarium graminearum species complex.

Characterization of the amyR gene encoding a transcriptional activator for the amylase genes in Aspergillus nidulans

Cloning and characterization of the streptothricin-resistance gene which encodes streptothricin acetyltransferase from Streptomyces lavendulae

Cloning, expression, and nucleotide sequence of the alpha-amylase gene from the haloalkaliphilic archaeon Natronococcus sp. strain Ah-36

Comparison and characterization of α-amylase inducers in Aspergillus nidulans based on nuclear localization of AmyR.

Comparison of the paralogous transcription factors AraR and XlnR in Aspergillus oryzae.

Complex regulation of hydrolytic enzyme genes for cellulosic biomass degradation in filamentous fungi

Comprehensive analysis of the DNA-binding specificity of an Aspergillus nidulans transcription factor, AmyR, using a bead display system

Comprehensive investigation of the gene expression system regulated by an Aspergillus oryzae transcription factor XlnR using integrated mining of gSELEX-Seq and microarray data

Conservation and diversity of the regulators of cellulolytic enzyme genes in Ascomycete fungi

Construction of a bacterial artificial chromosome library for a myxobacterium of the genus Cystobacter and characterization of an antibiotic biosynthetic gene cluster ⬇️

Construction of an excretion vector and extracellular production of human growth hormone from Escherichia coli

Control of reactive oxygen species (ROS) production through histidine kinases in Aspergillus nidulans under different growth conditions.

CreA-independent carbon catabolite repression of cellulase genes by trimeric G-protein and protein kinase A in Aspergillus nidulans

Deciphering the combinatorial DNA-binding code of the CCAAT-binding complex and the iron-regulatory basic region leucine zipper (bZIP) transcription factor HapX.

Effect of disrupting the trichothecene efflux pump encoded by FgTri12 in the nivalenol chemotype of Fusarium graminearum

Effects of acivicin on growth, mycotoxin production and virulence of phytopathogenic fungi

Enzymatic saccharification of Eucalyptus bark using hydrothermal pre-treatment with carbon dioxide.

Excretion of the penicillinase of an alkalophilic Bacillus sp. through the Escherichia coli outer membrane is caused by insertional activation of the kil gene in plasmid pMB9.

Expression in Escherichia coli of the carboxy terminal domain of the BLAR sensory-transducer protein of Bacillus licheniformis as a water-soluble Mr 26,000 penicillin-binding protein.

Expression profile of amylolytic genes in Aspergillus nidulans.

Functional analysis of the egl3 upstream region in filamentous fungus Trichoderma reesei

GFP-tagged expression analysis revealed that some histidine kinases of Aspergillus nidulans show temporally and spatially different expression during the life cycle.

Genes regulated by AoXlnR, the xylanolytic and cellulolytic transcriptional regulator, in Aspergillus oryzae.

Genome sequence of Aspergillus luchuensis NBRC 4314.

Genome sequencing and analysis of Aspergillus oryzae

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

Genomics of Aspergillus oryzae.

Haloalkaliphilic maltotriose-forming alpha-amylase from the archaebacterium Natronococcus sp. strain Ah-36.

High-throughput screening of DNA binding sites for transcription factor AmyR from Aspergillus nidulans using DNA beads display system

Hydroxylations of trichothecene rings in the biosynthesis of Fusarium trichothecenes: evolution of alternative pathways in the nivalenol chemotype.

Identification and Characterization of Small Molecule Compounds That Modulate Trichothecene Production by Fusarium graminearum

Identification and characterization of an inhibitor of trichothecene 3-O-acetyltransferase, TRI101, by the chemical array approach

Identification of amino acids negatively affecting Fusarium trichothecene biosynthesis

Identification of specific binding sites for XYR1, a transcriptional activator of cellulolytic and xylanolytic genes in Trichoderma reesei

Identification of the cis-acting elements involved in regulation of xylanase III gene expression in Trichoderma reesei PC-3-7.

Impact of nitrogen metabolism-associated culture pH changes on regulation of Fusarium trichothecene biosynthesis: revision of roles of polyamine agmatine and transcription factor AreA

In vitro analysis of His-Asp phosphorelays in Aspergillus nidulans: the first direct biochemical evidence for the existence of His-Asp phosphotransfer systems in filamentous fungi

Inducer-dependent nuclear localization of a Zn(II)(2)Cys(6) transcriptional activator, AmyR, in Aspergillus nidulans

Involvement of an SRF-MADS protein McmA in regulation of extracellular enzyme production and asexual/sexual development in Aspergillus nidulans

Isolation and characterization of a pock-forming plasmid pTA4001 from Streptomyces lavendulae. ⬇️

Isolation of genes encoding novel transcription factors which interact with the Hap complex from Aspergillus species.

Isomaltose formed by alpha-glucosidases triggers amylase induction in Aspergillus nidulans

Location of F1 ATPase-like genes on the physical map of the Bacillus subtilis 168 chromosome

ManR, a novel Zn(II)2Cys6 transcriptional activator, controls the β-mannan utilization system in Aspergillus oryzae

ManR, a transcriptional regulator of the β-mannan utilization system, controls the cellulose utilization system in Aspergillus oryzae

McmA-dependent and -independent regulatory systems governing expression of ClrB-regulated cellulase and hemicellulase genes in Aspergillus nidulans

Mode of AmyR binding to the CGGN8AGG sequence in the Aspergillus oryzae taaG2 promoter

Molecular cloning and nucleotide sequence of the groEL gene from the alkaliphilic Bacillus sp. strain C-125 and reactivation of thermally inactivated alpha-glucosidase by recombinant GroEL.

Molecular cloning, nucleotide sequence and expression of the structural gene for a thermostable alkaline protease from Bacillus sp. no. AH-101.

Natronococcus amylolyticus sp. nov., a haloalkaliphilic archaeon

No factors except for the hap complex increase the Taka-amylase A gene expression by binding to the CCAAT sequence in the promoter region

Novel alpha-glucosidase from Aspergillus nidulans with strong transglycosylation activity

Novel promoter sequence required for inductive expression of the Aspergillus nidulans endoglucanase gene eglA.

Novel reporter gene expression systems for monitoring activation of the Aspergillus nidulans HOG pathway

Novel β-1,4-Mannanase Belonging to a New Glycoside Hydrolase Family in Aspergillus nidulans

Nuclear translocation of the heterotrimeric CCAAT binding factor of Aspergillus oryzae is dependent on two redundant localising signals in a single subunit.

Oligosaccharides containing an α-(1→2) (glucosyl/xylosyl)-fructosyl linkage as inducer molecules of trichothecene biosynthesis for Fusarium graminearum.

Post-genomic approaches to understanding interactions between fungi and their environment.

Properties of glutamate dehydrogenase and its involvement in alanine production in a hyperthermophilic archaeon, Thermococcus profundus

Purification and Properties of Extracellular Amylase from the Hyperthermophilic Archaeon Thermococcus profundus DT5432.

Purification and biochemical characterization of streptothricin acetyltransferase coded by the cloned streptothricin-resistance gene of Streptomyces lavendulae ⬇️

Re-examination of genetic and nutritional factors related to trichothecene biosynthesis in Fusarium graminearum.