List of works by Eric A Miska

------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods

scientific article published on 25 June 2020

2'-O-Methyl-5-hydroxymethylcytidine: A Second Oxidative Derivative of 5-Methylcytidine in RNA.

scientific article published on 20 January 2017

A LIN28-dependent structural change in pre-let-7g directly inhibits dicer processing

scientific article published on 11 August 2011

A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway

scientific article

A comparative metabolomic study of NHR-49 in Caenorhabditis elegans and PPAR-alpha in the mouse.

scientific article published on 22 April 2008

A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity

scientific article published on 08 October 2013

A genetic pathway encoding double-stranded RNA transporters and interactors regulates growth and plasticity in Caenorhabditis elegans

scientific article published on 8 July 2019

A metabolomic strategy defines the regulation of lipid content and global metabolism by Δ9 desaturases in Caenorhabditis elegans

scientific article

A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans

scientific article

A study of Caenorhabditis elegans DAF-2 mutants by metabolomics and differential correlation networks. ⬇️

scientific article published on 11 March 2013

A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress

scientific article

Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis.

scientific article published on 23 July 2009

Acetylation of beta-catenin by CREB-binding protein (CBP).

scientific article

Acetylation of importin-alpha nuclear import factors by CBP/p300.

scientific article

Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma

scientific article published on 30 October 2018

An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans

scientific article published on 5 September 2017

Ancestral Hybridization Facilitated Species Diversification in the Lake Malawi Cichlid Fish Adaptive Radiation

scientific article published on 01 April 2020

Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

scientific article published on 18 August 2019

Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages

scientific article published on 10 February 2015

Antiviral RNA Interference against Orsay Virus Is neither Systemic nor Transgenerational in Caenorhabditis elegans

scientific article

Antiviral RNA interference in animals: piecing together the evidence

scientific article published on November 2013

Artificial and natural RNA interactions between bacteria and C. elegans

scientific article published on 23 March 2017

Betaine acts on a ligand-gated ion channel in the nervous system of the nematode C. elegans

scientific article

COMRADES determines in vivo RNA structures and interactions

scientific article published on 10 September 2018

Caenorhabditis elegans RSD-2 and RSD-6 promote germ cell immortality by maintaining small interfering RNA populations

scientific article

Caenorhabditis elegans and friends in Los Angeles

scientific article

Canalisation and plasticity on the developmental manifold of Caenorhabditis elegans

scientific article published on 9 November 2023

Canalisation and plasticity on the developmental manifold of Caenorhabditis elegans

scientific article published on 15 April 2023

Characterisation of microRNA expression in post-natal mouse mammary gland development

scientific article

Competition between virus-derived and endogenous small RNAs regulates gene expression in Caenorhabditis elegans.

scientific article published on 28 June 2013

Considerations when investigating lncRNA function in vivo.

scientific article

Correction: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress

scientific article published on 5 October 2017

Cysteine synthases CYSL-1 and CYSL-2 mediate C. elegans heritable adaptation to P. vranovensis infection

scientific article published on 08 April 2020

DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans

scientific article published on 25 August 2020

Developmental characterization of the microRNA-specific C. elegans Argonautes alg-1 and alg-2

scientific article (publication date: 2012)

Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans

scientific article

Differential localization of HDAC4 orchestrates muscle differentiation

scientific article

E. coli OxyS non-coding RNA does not trigger RNAi in C. elegans

scientific article published on 15 April 2015

ER-associated RNA silencing promotes ER quality control

scientific article published in December 2022

Epigenetic divergence during early stages of speciation in an African crater lake cichlid fish

scientific article published in 2022

Epigenetic remodelling licences adult cholangiocytes for organoid formation and liver regeneration

scientific article published on 04 November 2019

Erratum: A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans

scholarly article published in Nature Methods

Formation and abundance of 5-hydroxymethylcytosine in RNA.

scientific article published on 12 February 2015

Function, targets, and evolution of Caenorhabditis elegans piRNAs

scientific article published on 14 June 2012

Functional genomic, computational and proteomic analysis of C. elegans microRNAs

scientific article published on May 2008

Genetic unmasking of an epigenetically silenced microRNA in human cancer cells

scientific article

Genome-wide identification of targets and function of individual MicroRNAs in mouse embryonic stem cells

scientific article

Genomics of cold adaptations in the Antarctic notothenioid fish radiation

scientific article published in 2023

Getting a grip on piRNA cluster transcription

scientific article

HDAC4 deacetylase associates with and represses the MEF2 transcription factor

scientific article

How microRNAs control cell division, differentiation and death

scientific article

Identification of functional long non-coding RNAs in C. elegans

Identification of functional long non-coding RNAs inC. elegans

Identification of putative reader proteins of 5-methylcytosine and its derivatives in RNA

scientific article published in 2022

Identification of small molecule inhibitors of the Lin28-mediated blockage of pre-let-7g processing

scientific article

Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice

scientific article

Intergenerational adaptations to stress are evolutionarily conserved, stress-specific, and have deleterious trade-offs

scientific article published on 08 October 2021

Involvement of circulating factors in the transmission of paternal experiences through the germline

scientific article published on 09 October 2020

LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans

scientific article

Loss of the E3 ubiquitin ligases UBR-5 or HECD-1 restores Caenorhabditis elegans development in the absence of SWI/SNF function

scientific article published on 28 September 2022

Loss of the E3 ubiquitin ligases UBR-5 or HECD-1 restores development in the absence of SWI/SNF function

scientific article published on 31 January 2023

MEF-2 function is modified by a novel co-repressor, MITR

scientific article

Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes

scientific article published on 07 October 2021

Maternal Argonaute 2 is essential for early mouse development at the maternal-zygotic transition

scientific article (publication date: October 2008)

Mature sperm small-RNA profile in the sparrow: implications for transgenerational effects of age on fitness

scientific article published on 01 April 2019

Members of the miRNA-200 family regulate olfactory neurogenesis

scientific journal article

MiR-210 is induced by Oct-2, regulates B cells, and inhibits autoantibody production

scientific article published on 19 August 2013

MicroRNA biogenesis is required for mouse primordial germ cell development and spermatogenesis.

scientific article

MicroRNA expression in zebrafish embryonic development

scientific article

MicroRNA expression profiles classify human cancers

scientific article (publication date: 9 June 2005)

MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype

scientific article

MicroRNA functions in animal development and human disease

scientific article

MicroRNA: implications for cancer

scientific article

MicroRNAs--keeping cells in formation

scientific article published on 01 May 2008

Microarray analysis of microRNA expression in the developing mammalian brain

scientific article published in 2004

Molecular biology. Is there social RNA?

scientific article published in August 2013

Most Caenorhabditis elegans microRNAs are individually not essential for development or viability

scientific article

Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses

scientific article (publication date: 2011)

Nuclear receptor corepressors partner with class II histone deacetylases in a Sin3-independent repression pathway

scientific article

Oral transfer of chemical cues, growth proteins and hormones in social insects

scientific article published on 19 August 2019

PRDE-1 is a nuclear factor essential for the biogenesis of Ruby motif-dependent piRNAs in C. elegans

scientific article

Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements

article

Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline

scientific article

Post-developmental microRNA expression is required for normal physiology, and regulates aging in parallel to insulin/IGF-1 signaling in C. elegans

scientific article published on 24 October 2012

Publisher Correction: Sequencing cell-type-specific transcriptomes with SLAM-ITseq

scientific article published on 01 August 2019

RIP-chip-SRM--a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans

scientific article

RNA interference has second helpings

scientific article published on 01 March 2007

RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans.

scientific article

RNAi pathways in the recognition of foreign RNA: antiviral responses and host-parasite interactions in nematodes

scientific article published on August 2013

Receptor tyrosine kinases regulate signal transduction through a liquid–liquid phase separated state

scientific article published on 29 October 2019

Reduced insulin/IGF-1 signaling restores germ cell immortality to Caenorhabditis elegans Piwi mutants

scientific article

Regulation of gene expression by transcription factor acetylation

scientific article

Regulation of pre-miRNA Processing.

scientific article published in January 2011

Regulation of pre-miRNA processing.

scientific article published on January 2010

Requirement of bic/microRNA-155 for normal immune function

scientific article

Retinoblastoma protein recruits histone deacetylase to repress transcription

scientific article

SID-2 negatively regulates development likely independent of nutritional dsRNA uptake

scientific article published on 12 October 2020

SLAM-ITseq: Sequencing cell type-specific transcriptomes without cell sorting

SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting

scientific article published on 11 July 2018

Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain

scientific article (publication date: March 2001)

Sequencing cell-type-specific transcriptomes with SLAM-ITseq

scientific article published on 26 June 2019

Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements

scientific article published on 24 September 2013

Small RNAs break out: the molecular cell biology of mobile small RNAs

scientific article

Structural features within the NORAD long noncoding RNA underlie efficient repression of Pumilio activity

scientific article published on 26 September 2024

Structural features within the NORAD long noncoding RNA underlie efficient repression of Pumilio activity

scientific article published on 19 November 2021

Terminal uridylyltransferases target RNA viruses as part of the innate immune system

scientific article published on 13 August 2018

Terminal uridylyltransferases target RNA viruses as part of the innate immune system in animals

Tertiary siRNAs mediate paramutation in C. elegans

scientific article

The E7 oncoprotein associates with Mi2 and histone deacetylase activity to promote cell growth

scientific article

The Profile and Dynamics of RNA Modifications in Animals

scientific article published on 16 March 2017

The RNA polymerase II subunit RPB-9 recruits the integrator complex to terminate Caenorhabditis elegans piRNA transcription

scientific article published on 03 February 2021

The SUMO E3 ligase RanBP2 promotes modification of the HDAC4 deacetylase

scientific article

The Short- and Long-Range RNA-RNA Interactome of SARS-CoV-2

scientific article published on 05 November 2020

The USTC co-opts an ancient machinery to drive piRNA transcription in

scientific article published on 19 December 2018

The cell cycle-regulating transcription factors E2F-RB.

scientific article

The co-repressor mSin3A is a functional component of the REST-CoREST repressor complex

scientific article

The conserved miR-51 microRNA family is redundantly required for embryonic development and pharynx attachment in Caenorhabditis elegans

scientific article

The genomic substrate for adaptive radiation in African cichlid fish

scientific article

The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans

scientific article

The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans

scientific article

The microRNAs of Caenorhabditis elegans

scientific article published on 15 July 2010

The shaping and functional consequences of the microRNA landscape in breast cancer

scientific article published on 5 May 2013

Tissue- and sex-specific small RNAomes reveal sex differences in response to the environment

scientific article published on 08 February 2019

Translational adaptation to heat stress is mediated by RNA 5-methylcytosine in Caenorhabditis elegans

scientific article published on 07 December 2020

Two Piwi proteins, Xiwi and Xili, are expressed in the Xenopus female germline.

scientific article published on February 2009

Visualizing formation of the active site in the mitochondrial ribosome

scientific article published on 5 October 2021

Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

article

Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

article

Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

scientific article published in 2018

Wolbachia Blocks Viral Genome Replication Early in Infection without a Transcriptional Response by the Endosymbiont or Host Small RNA Pathways

scientific article

miR-124 acts through CoREST to control onset of Sema3A sensitivity in navigating retinal growth cones.

scientific article published on 4 December 2011

miRNAs in cancer: approaches, aetiology, diagnostics and therapy

scientific article published on April 2007

piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans

scientific article

piRNAs: from biogenesis to function

scientific article

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